Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1849 ATGGAGCCCATAGCTTGCCTGAGCGACGGCAAGAGCGGCACTTCGGTGGTGGCTATGGCGACGGATTCGGAATCGGAACCTTCCTTTGCTACGTCGCCGATTAACTTATCAGGGTGCCAGGCGATTTCCTGGGCTTTGATTCCGTTTAACGAATTCGGATACGGGTCATACTGGGCGGGTCAGATATTCAGTGATATCCAGTTGCAATGGAACAAACCTACCTGCGAGTATCCAGACTGTTCCAATAAAAGCAAAATTGGCCTAGGCTTGGGCCTGGGAATACCGGCCGGAATAATATGGCTCATTGTGGTTTCATATTTGACTTACACCGCTAAGAAGAGGAGAACGAGCCGTGAGCGAGTGGGGGAAGGAAGCATTGAATTAAATAACAACCAGCAGTCGCAACCCTCTATTGCAGCTCCAGCAGTGGCGGTTGGTGAAGCAGACATAGAACGATACCCAAAAACAAAGGTTGAAGATGATGGAAAGTTGCCAAACTCTAATAATTATGTGTGCTCCATATGTTTATGTGAATACCAACCAAAGGAGATATTGAGGACTATACCAGATTGCGATCACTATTTCCATGCCCATTGCTTAGAGGGGTGGCTTAGGATTAATGCTTCATGCCCTTTGTGTCGGAACCTGCCAAAGAGTTCCTCTAGCTTCACATCTCCTAATTTGGCCCAATCTTCATCTTCTTTATAA 708 0.4689 MEPIACLSDGKSGTSVVAMATDSESEPSFATSPINLSGCQAISWALIPFNEFGYGSYWAGQIFSDIQLQWNKPTCEYPDCSNKSKIGLGLGLGIPAGIIWLIVVSYLTYTAKKRRTSRERVGEGSIELNNNQQSQPSIAAPAVAVGEADIERYPKTKVEDDGKLPNSNNYVCSICLCEYQPKEILRTIPDCDHYFHAHCLEGWLRINASCPLCRNLPKSSSSFTSPNLAQSSSSL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1849 235 SMART ring_2 172 213 IPR001841 -
Glsi04g1849 235 SUPERFAMILY RING/U-box 166 217 - -
Glsi04g1849 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 219 IPR013083 -
Glsi04g1849 235 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 217 IPR046948 -
Glsi04g1849 235 ProSiteProfiles Zinc finger RING-type profile. 172 214 IPR001841 -
Glsi04g1849 235 Pfam Ring finger domain 172 214 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1849 Glsi-ChrGlsi04 67486236 67488276 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1849 87 224 C3H Transcription Factor Family AT5G07040 36.620 1.35e-26 99.0