Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1846 ATGGCTACCTTCCCACTCTACATTTTAGCTTCTTTTCTTTTCTTCTTTCTCCTCCTTTTTCCTCACTCAACAACAAGCACTGAAACTTGCACTTGGAGATTCTGTGGAAGCTCACCGTTTGGTCCTCCTATTCAATTCCCTTTCAAGCTCAAAGGAGACGGCCAAAGCGATAGATGTGGGTACCCAGGCTTCGACGTTTTCTGCAGCAACAAGAACAATAACCAGACGCTGCTCCATCTCCCAAACGGCGGCGTTTTCGAACTCAACAGCATCTCCTACCCCGATCGCAAGCTTTGGATCAACGACCCCGACGATTGCCTCCCAAAACTCTTCCTCCGTCAACGAATCATAGACTTTTCAGGTTCTCCCTTCGAACTGAGCGACGAACTCAGGCTTGTCAACTTCACCTTCCTCACATGCTCCAACGTGACTTCCCGTTACTTCTACCCGATGGAGCCCTTAGCGTGCCTGAGCGACGGCAAGAGCGGCACTTCGGTGGTGGCTATGGCGTCGGAATTGGAATCGGGACCTTCCTTTGCGACGTCGCCGATTAACTTATCGGGGTGCCAGGCGATTTCCTGGGCTTTGGTTCCGTTTAACGAATTCGGATACGGGTCATACTGGGCGGATCAGATATTCGGTGATATCCAGTTGCAATGGAACAAACCTACCTGCGAGTATCCAGATTGTGAATTAAGTTCCAATAAAAGCAAAATTGGCCTAGGCTTGGGCCTGGGAATACCAGCTGGAATAACATGGCTCATTGTGGTTTTATATATGGCCTACACCGCTAAGAAGAGGAGAACGAGCCGTGAGCGAGTGGGGGAAGGAAGCATTGAGTTAAATAATAACCAGCAGCCACAACCCTCAATTGGAGCTCCAGCAATGGCGGTTGGTGAAGCAGACATAGATAGATATCCAAAAAAAATGGTTGAAGATGATGGAAAGTTGCCAAACCCTAATAATGATACTGTGTGCTCCATATGTTTATGTGAGTACCAACCCAAGGAGATATTGAGGACAATACCAGATTGCAATCACTATTTCCACGCCCATTGCTTAGAGGGTTGGCTTAAGATTAATGCTTCATGCCCTTTGTGTAGGAACCTGCCAAAGAGTTCCTCTAGCTTGACATCTTCTAATGTGCCCCAATCTTCATCTTCTTCGTGA 1170 0.4769 MATFPLYILASFLFFFLLLFPHSTTSTETCTWRFCGSSPFGPPIQFPFKLKGDGQSDRCGYPGFDVFCSNKNNNQTLLHLPNGGVFELNSISYPDRKLWINDPDDCLPKLFLRQRIIDFSGSPFELSDELRLVNFTFLTCSNVTSRYFYPMEPLACLSDGKSGTSVVAMASELESGPSFATSPINLSGCQAISWALVPFNEFGYGSYWADQIFGDIQLQWNKPTCEYPDCELSSNKSKIGLGLGLGIPAGITWLIVVLYMAYTAKKRRTSRERVGEGSIELNNNQQPQPSIGAPAMAVGEADIDRYPKKMVEDDGKLPNPNNDTVCSICLCEYQPKEILRTIPDCNHYFHAHCLEGWLKINASCPLCRNLPKSSSSLTSSNVPQSSSSS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1846 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 373 IPR013083 -
Glsi04g1846 389 SMART ring_2 326 367 IPR001841 -
Glsi04g1846 389 Pfam Wall-associated receptor kinase galacturonan-binding 33 102 IPR025287 GO:0030247
Glsi04g1846 389 SUPERFAMILY RING/U-box 321 370 - -
Glsi04g1846 389 Pfam Ring finger domain 325 368 IPR001841 -
Glsi04g1846 389 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 371 IPR046948 -
Glsi04g1846 389 ProSiteProfiles Zinc finger RING-type profile. 326 368 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1846 Glsi-ChrGlsi04 67453167 67455564 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1846 45 371 C3H Transcription Factor Family AT2G25410 30.726 7.16e-42 149