Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1845 ATGTTCTTGTTCCACCCCAGTGAGCCTCAGTCACTTGTTAATTTTGCTTGCAAAGAGATTATTGGTATGGTTTTTGTTGGAAGTCCGAGCCAATTTATCCACAGCGTGTGTGCAATTGTCGTTAAGGGTCATTGGAGCAATCTATTGAAGGTGAAGTATGGTTCTGCTCTCACTTCTACTACCATTCACCAGGTACTTCTGCAACTATCCCTCCATGGTTACGGTCCATCTCTTTCCTTGGCATTCTTCAAATGGGTTGAGTCAATCCCAAATTATAAGCACCCTTTGCAATGCTCATGGGCCATGTTTCATATCCTGGTTAAGCATAAACATTTTAAAACTGCACAAGAGATGCTTGAAAAAATTGCTCACAGGGATTTTCTGTCATCACCATCAGTTTTGAAAACTTTGGTGGAAATTCAAGATGACCCAGAAGTAAATTCGCAAATATTGAGCTGGCTTGTAATACATTATGCAAAGTCAAAGATGACTGACGATGCCATTCAGGTTTTTGAGCAGATGAGGTTATATAAATTGAACCCTCATTTGCATGCTTGTACTGTGCTTTTGAATTCATTGGTGAAGGATGGGGTTACTAATATGGTATGGAAGATTTACAAAAAAATGGTTCAAATTGGGGTTTTTCCTAATATACATATATATAATGTGTTAATCCATGCTTGTTCCATATCAGGAGATGTGGAGAGGGCTGAACAGTTACTAAATGAGATGGAAGTGAAGAGCGTGCTTCCTGATATTTTCACATACAATACTTTGATATCATTATATTGCAGGAAAAGTATGCACTATGAGGCTTTATCCATCCAGGATAAAATGGAAAGAGAAGGAATAAATCTTGATATTGTTAGTTACAATTCTCTTATTTATGGATTTTGTAGAGAGGGTCGGATGAGAGAAGCCATGAGGATATTTAACGAAATCAAAGGTGCAATTCCCAATCATGTTACTTATACTACATTGATTGATGGGTATTGTAAAACAAATGACATGGAGGAAGCTCTGAAATTGCGTGAGGTGATGGAGGGTAAGGGATTGTACCCTGGAGTTGTCACTTATAATTCAATTTTGCGCAAGCTATGTCAGGATGGCAGAATAAGAGATGCAAATCGACTCTTGACTGAGATGAGTGAAAGGAAAGTTCAAGCTGACAATGTCACATGTAACACATTGATTAATGCTTACTGCAAGATAGGAGACATGAAATCTGCATTGAAATTTAAGAACAAGATGTTAGAGGCTGGACTGAAGCCTGACCCATTTACGTATAAAGCATTAATTCATGGGTTCTGCAAGATAAAGGAGCTAGATAGTGCCAAGGAGGTATTGTTTGGCATGCTTGATGCTGGATATTTCCCAAATTACTACACTTATTCATGGATTGTAGATGGTTACTGCAGTAAAGACAATGAAGAGGCAGTTGTTACACTCCCAGACGAGTTTCTTAGAAGAGGTCTTTGTATTGATGTTTCAGTACACAGGGCATTGATAAGAAGGTTATGTAAGTTAGAAAGGATAGCATGTGCTGAAAAGATATTCAATCTTATGGAAGAGAAGGGTATACTAGGTGATAGCGTTATCTACACCAGTCTTGCTTATGCTTACTGGAAATCAGGGAATGCGCGTGTTGCCTCAACTATGTTAGAAGAGATGACTAAGAGGAGGTTGATGATAACAGGCAAAATCTATAGATGTTTCAGTGACCCTGTTGGTAGTGAAAAGCACACATCATGTTTATTTTGGAATCACGTGGTTGAGAGGGGCCTAATGTCAAGAAATACAATGAATAAAATACAGCAGATGGCATTATGA 1830 0.3836 MFLFHPSEPQSLVNFACKEIIGMVFVGSPSQFIHSVCAIVVKGHWSNLLKVKYGSALTSTTIHQVLLQLSLHGYGPSLSLAFFKWVESIPNYKHPLQCSWAMFHILVKHKHFKTAQEMLEKIAHRDFLSSPSVLKTLVEIQDDPEVNSQILSWLVIHYAKSKMTDDAIQVFEQMRLYKLNPHLHACTVLLNSLVKDGVTNMVWKIYKKMVQIGVFPNIHIYNVLIHACSISGDVERAEQLLNEMEVKSVLPDIFTYNTLISLYCRKSMHYEALSIQDKMEREGINLDIVSYNSLIYGFCREGRMREAMRIFNEIKGAIPNHVTYTTLIDGYCKTNDMEEALKLREVMEGKGLYPGVVTYNSILRKLCQDGRIRDANRLLTEMSERKVQADNVTCNTLINAYCKIGDMKSALKFKNKMLEAGLKPDPFTYKALIHGFCKIKELDSAKEVLFGMLDAGYFPNYYTYSWIVDGYCSKDNEEAVVTLPDEFLRRGLCIDVSVHRALIRRLCKLERIACAEKIFNLMEEKGILGDSVIYTSLAYAYWKSGNARVASTMLEEMTKRRLMITGKIYRCFSDPVGSEKHTSCLFWNHVVERGLMSRNTMNKIQQMAL 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1845 609 Pfam PPR repeat family 390 438 IPR002885 -
Glsi04g1845 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Glsi04g1845 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Glsi04g1845 609 NCBIfam pentatricopeptide repeat 254 287 IPR002885 -
Glsi04g1845 609 NCBIfam pentatricopeptide repeat 392 425 IPR002885 -
Glsi04g1845 609 NCBIfam pentatricopeptide repeat 427 460 IPR002885 -
Glsi04g1845 609 NCBIfam pentatricopeptide repeat 289 315 IPR002885 -
Glsi04g1845 609 NCBIfam pentatricopeptide repeat 322 355 IPR002885 -
Glsi04g1845 609 NCBIfam pentatricopeptide repeat 499 530 IPR002885 -
Glsi04g1845 609 NCBIfam pentatricopeptide repeat 357 390 IPR002885 -
Glsi04g1845 609 NCBIfam pentatricopeptide repeat 220 253 IPR002885 -
Glsi04g1845 609 Gene3D Tetratricopeptide repeat domain 278 345 IPR011990 GO:0005515
Glsi04g1845 609 Gene3D Tetratricopeptide repeat domain 346 416 IPR011990 GO:0005515
Glsi04g1845 609 Gene3D Tetratricopeptide repeat domain 417 484 IPR011990 GO:0005515
Glsi04g1845 609 Gene3D Tetratricopeptide repeat domain 44 210 IPR011990 GO:0005515
Glsi04g1845 609 Gene3D Tetratricopeptide repeat domain 211 277 IPR011990 GO:0005515
Glsi04g1845 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Glsi04g1845 609 Gene3D Tetratricopeptide repeat domain 485 581 IPR011990 GO:0005515
Glsi04g1845 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Glsi04g1845 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Glsi04g1845 609 SUPERFAMILY TPR-like 165 431 IPR011990 GO:0005515
Glsi04g1845 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Glsi04g1845 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Glsi04g1845 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Glsi04g1845 609 Pfam Pentatricopeptide repeat domain 517 562 IPR002885 -
Glsi04g1845 609 Pfam PPR repeat 350 383 IPR002885 -
Glsi04g1845 609 Pfam PPR repeat 315 348 IPR002885 -
Glsi04g1845 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 317 IPR002885 -
Glsi04g1845 609 Pfam Pentacotripeptide-repeat region of PRORP 159 309 IPR033443 -
Glsi04g1845 609 FunFam Pentatricopeptide repeat-containing protein At5g39710 270 374 - -
Glsi04g1845 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Glsi04g1845 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Glsi04g1845 609 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 102 419 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1845 144 574 Glycosyltransferase AT1G05670 31.178 2.45e-64 223