Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1837 ATGAGTTCACCTGCTGTGGAGAAGATGGAAGATGTGAAGCCTTCAGCTGCCTCAGCTAACAGTTCTCAGGTCGATGGCGAACATGGTGAAACCGCTGATTCTCGATTCACAGAATTGTGCAAGAATGGGCTCTCAATGGATGAGAAAAGTTGTAGACAAGCAATGAAGCTGTTCACAGAAACCAAACACCTTCTGCTGACAAATATCTCATCTTTAGGGAATGGAACGTATGAAGAAGCGGAACGATATTGGTTTTCTTTTATTTTATACTCTTTCAAGAGATTGTCTGAGAAGAATGCAGACAGTGAGAAGGAAGGAACTGATAGTAATGGGCTTACCTTGTGCCAGATATTGAGAGTGGCAAAGCTAAACATCGCAGACTTTTTCAAAGAACTTCCTCAGTTTGTTGTTAAGGGTGGTTCAATTTTAAGTAATATATATGGTGCAGATTGGGAAAACAGGCTTGAGGTATTGACTAAGTTGATATTCATGCTTACAGTTTTGCAAAGTTTGTCTTCAAGTGGCACAACTATTATCAGGTATTATAAACGTGCATTTGGGGAGTTCTTTGTGGCAAATGATGCAAATGTTGAAAAGCAGTCAGCTGTTGCCATGACCACTGATTATGCATCTCAATATCATCGTTTTGGATGGTTGCTTTTCTTGGCACTTCGTGTCCATGCCTTCAGCCGTTTTAAAGACTTAGTGACCTGCACCAATGGTTTAGTTTCTGTATTGGCTATCTTGATTATTCACGTTCCTATTCGCTTTAGAAATTTTAACATTCATGACTCTTCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTGGACCTCGTTGCCTCACTTTGCAACATCTATGACACTTCTGAAGATGAGTTGAGGAAAACCATGGAGAAAGCCAATAATCTAATTGCAGATATATTGAAGAAGAAGCCTGGTTTGGCATCTAAATGTGAAACTGAAACCCTAGAGAATATTGATAGAGATGGTTTGGTCTACTTTAATGATCTTATGGATGAATTATCTCTGCCATCCTGCTTAAATATTTTAGAAAAAGACTATGATCTTGCAATTCGTAACAAGGGTGAACTGGATGAGAGGTTGTTCATCAATGAAGAGGACAGCTTATTAGCTTCAGGAAGCTTGTCTGGAGGTTCTATGTCAGCAAGTGGTGTCAAGAGGAAATTTGATTCATTGGCATCACCTGCAAAGACAATTACAAGTCCACTCTCTCCCCAATGTTCTCCTGCATCTCATGCCAATGGCATTCCGAGTAGTGCAAATTCAAAGATGGCAGCCACCCCAGTAAGCACTGCTATGACTACTGCTAAATGGCTTCGTACTGTCATATCTCCACTTCCATCAAAGCCCTCTCCGGAGCTGGAGAGATATCTGGCGTCATGTGATAGGGATGTTACTCGTGATGTTGTGTGCAGAGCACAGATTATATTGCAGGCTATATTTCCGAGTAGTCCTCTTGGAGAACGATGTTTAACTGGAAGCCTTCAAAGTGCAAATCTCATGGACAATGTTTGGGCGGAACAACGACGACTGGAAGCCCTGAAATTATACTATAGGGTCTTGGAAGCAATGTGCAGAGCAGAAACCCAAATACTGCATGCAAATAACTTAACCTCATTATTAACTAATGAGAGGTTCCATAGATGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCGACACATAAGACTGTAACAATGTTGTTTCCTGCAGTTCTTGAGAGGACTGGAATCACAGCTTTTGACCTTAGCAAGGTAATAGAAAGTTTCATTAGACATGAGGATTCTCTCCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTTTTGGAGAGTATGGTTTGGGAAAAGGGTTCCTCAATGTATAATTCTTTGACAGTTGCTAGACCTTCGCTTTCTTCAGAAATAAACCGTCTAGGATTGTTGGCTGAACCAATGCCATCGTTGGATGCAATTGCAATGCATATTAACTTCTCTTTTGGGGGGTTACCCCCTGTGCCTTCCTTGCAGAAGCTTGAGACTTCAACGAGTAATGGTCAGAATGGGGATACCAGGTCTCCCAAGCGACTCTGCACAGAATATCGAAGTGTGCTAGCAGAACGAAATTCCTTTACATCACCAGTGAAGGAGCGGCTTCTGCCCTTCAGCAATCTTAAGTCAAAGCTACCCCCTCCTCCTTTACAATCAGCATTTGCAAGTCCAACAAGACCAAATCCAGGAGGTGGAGGGGAGACATGTGCAGAAACTGGGATCAATATCTTTTTCGGCAAGTTAAGATTTGATGATTTATTTTGCTGCTTCATTTTGTCCTTGTCATTCTCCTTAAGCACGCACTTCTTGTGTGAACTTGGTGTCTCCCAGATTGTTAAGTTGGCAGCAGTCAGAATTTCTCAACTGAACCTAACTTTTAGGGAGATCATATACAACTATAGGAAGCAACCACAGTGCAAACCACAAGTTTTTCGCAGTGTATTTGTTGATTGGTCATTAACACGCCGTAATGGGAGAACAGGGCAGGAGCATGTGGATATTATTACATTTTACAATGAAATATTCATTCCCTCTGTAAAAGCTCTGCTGGTTGAGCTCGGTCCTGGGGGAACAACTACAAAAATCAACCGGATACCTGAAATCAACAACAACAGTGATGGCCATTTAGCTCAATGTCCTGGATCTCCTAAAATATCTCCTTTCCCTACCCTTCCTGATATGTCTCCAAAAAAAGTGTCTGCTGCACACAATGTTTATGTCTCTCCATTACGATCATCTAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTACTACGCCTGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACTGCTATCAATAACCGATTGAATGGCACCACCCGGAAGGTTAGAGGTCCCCTCAACTTTGACGATGTTGATGTTGGCTTGGTTAGTGACTCTATGGTTGCAAACAGCCTCTATCTTCAGAATGGAAGCTGCGCATCATCATCAGGTGCACCAGTGAAGTCTGAGCAACCAGACTCTTGA 3072 0.4209 MSSPAVEKMEDVKPSAASANSSQVDGEHGETADSRFTELCKNGLSMDEKSCRQAMKLFTETKHLLLTNISSLGNGTYEEAERYWFSFILYSFKRLSEKNADSEKEGTDSNGLTLCQILRVAKLNIADFFKELPQFVVKGGSILSNIYGADWENRLEVLTKLIFMLTVLQSLSSSGTTIIRYYKRAFGEFFVANDANVEKQSAVAMTTDYASQYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSVLAILIIHVPIRFRNFNIHDSSRFVKKSSKGVDLVASLCNIYDTSEDELRKTMEKANNLIADILKKKPGLASKCETETLENIDRDGLVYFNDLMDELSLPSCLNILEKDYDLAIRNKGELDERLFINEEDSLLASGSLSGGSMSASGVKRKFDSLASPAKTITSPLSPQCSPASHANGIPSSANSKMAATPVSTAMTTAKWLRTVISPLPSKPSPELERYLASCDRDVTRDVVCRAQIILQAIFPSSPLGERCLTGSLQSANLMDNVWAEQRRLEALKLYYRVLEAMCRAETQILHANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSSEINRLGLLAEPMPSLDAIAMHINFSFGGLPPVPSLQKLETSTSNGQNGDTRSPKRLCTEYRSVLAERNSFTSPVKERLLPFSNLKSKLPPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKLRFDDLFCCFILSLSFSLSTHFLCELGVSQIVKLAAVRISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSLTRRNGRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTTTKINRIPEINNNSDGHLAQCPGSPKISPFPTLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTTRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPDS 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1837 1023 Pfam Domain of unknown function (DUF3452) 106 252 IPR024599 -
Glsi04g1837 1023 SUPERFAMILY Cyclin-like 802 877 IPR036915 -
Glsi04g1837 1023 Gene3D - 213 371 - -
Glsi04g1837 1023 FunFam Retinoblastoma-related protein 1 213 371 - -
Glsi04g1837 1023 Coils Coil 347 367 - -
Glsi04g1837 1023 SMART DUF3452_2 95 252 IPR024599 -
Glsi04g1837 1023 FunFam Retinoblastoma-related protein 1 437 625 - -
Glsi04g1837 1023 Pfam Retinoblastoma-associated protein A domain 434 635 IPR002720 GO:0005634|GO:0051726
Glsi04g1837 1023 Gene3D - 437 625 - -
Glsi04g1837 1023 MobiDBLite consensus disorder prediction 1 31 - -
Glsi04g1837 1023 Coils Coil 286 310 - -
Glsi04g1837 1023 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 30 768 IPR028309 GO:0006357|GO:0051726
Glsi04g1837 1023 Pfam Retinoblastoma-associated protein B domain 803 867 IPR002719 GO:0005634|GO:0051726
Glsi04g1837 1023 SMART RB_A_2 434 635 IPR002720 GO:0005634|GO:0051726
Glsi04g1837 1023 MobiDBLite consensus disorder prediction 407 429 - -
Glsi04g1837 1023 Gene3D - 796 890 - -
Glsi04g1837 1023 SUPERFAMILY Cyclin-like 442 637 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1837 Glsi-ChrGlsi04 67272822 67280675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1837 9 1023 Core Cell Cycle Gene Families AT3G12280 65.333 0.0 1286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Glsi04g1837 RB_A 4.7e-65 CL0065