Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1830 ATGATACCCAGACTTTACACTGTAGATGCCATTGTTACTATAGGGCCAGATCAAAGCATCCTTGCTAAGATTGCACACTTTCCAGTCTTCTCCCATGCTTTCCACTTGAGGAATTTTGTTGCCATTCATAAGCCAATTGTCCTTGAAAATGTTTATCTCTGTACCATCATTTACCTGCCACCAGCAAGAGTTGTTGAAAAAGTTTCTACCTTGAAAATACAATCATTACCATCAGCCCCATCAGAATTCCAAGGTGGGTTTGGCTCAATTTCTGCTTTTCAGCAAAATCTTCTTGTTCCTGGTGAATTTTACCGCAACTCACAGGGTATTCATCAAGATGACAAGGGAGGAGAAAGAGGGATGCCGAGCTCCGATTCTCATTTGCCCATTTCTAATGCACGCTATGCAGATGGAAACACAATTGATTCTTTTCACGTTTCTGACTTTGGGGCATTTAATCAATCAGTCATGCATCGCTCAGATGATGCTGTTGACTTGAGTGGAAACTCAGTTTTTAATTCACTAAAAGTAAGTAGCCAAACAATTTCTCCTGGTCCCATTCGTATTGATAATTCTGATCAGTTGCAAACTTCACTTGATAAAAACCAATTCACTTACCAGTCAGAGTCACAAAGGTTGCAATTACGAAAGGTCCAATCATCAAACTTGGTTACCATATCAGGTGGTAATACCGAAAACCAGGAAGAATCTGCCATGGCTGATGCCAGTCCTAGGACTGATATTTCTACAGATGGGGATACTGATGATAAGAATCAGCGGTTTGATAGAAATCTATCCCTTCCTGCTGTGGCTTCTGATTCCAGTGACAGATCCAAGGATAAATCAGATCAGAAGACTCTTCGCAGGCTTGCTCAGAATCGTGAGGCTGCAAGGAAAAGCCGGCTGAGAAAGAAAGCCTATGTCCAACAGTTGGAAAGTAGTCGATTGAAGTTGACCCAGCTAGAGCAAGAGCTTCAGCGAGCCAGGCAGCAGGGAATTTTCATATCAAGCGCCGGTGATCAAGCACATTCAATGAGTGGAAATGGGGCAATGGCATTTGATGTAGAATATGCAAGGTGGCTAGAAGAGAAGAATCGACAAATTAATGAGCTAAGAGCAGCTGTAAACTCTCATGCAAGTGATACAGAACTGCGCATGATTGTTGATGGTATATTGGCTCATTATGATGAGATTTTTAAGCTGAAGAGTACTGCTGCTAAGGCTGATGTTTTCCATTTGTTGTCTGGCATGTGGAAAACACCTGCTGAGAGATGTTTTCTGTGGCTTGGTGGTTTTCGGTCATCCGAACTTCTCAAGCTCCTGGTAAATCAACTGGAGCCCCTAACTGAGCAGCAGTTGATGGGTATTACCAACTTGCAGCAATCCTCTCAACAAGCAGAAGATGCTTTATCTCAAGGTATGGAAGCCTTGCAGCAGTCTCTGGCTGAAACACTGTCCACTGGATCTCCTAGTTCATCTGGTTCATCAGGAAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGGGACCCTTGAGGGGTTTATTCGGCAGGCTGACAATCTGAGGCAGCAGACACTGCAACAAATGCATCGAATATTGACAACTCGGCAATCGGCTCGTGCACTGCTGGCAATACATGATTATTTCTCCCGGCTGCGTGCTCTCAGTTCCCTCTGGCTGGCTCGCCCCAGAGATTGA 1713 0.4407 MIPRLYTVDAIVTIGPDQSILAKIAHFPVFSHAFHLRNFVAIHKPIVLENVYLCTIIYLPPARVVEKVSTLKIQSLPSAPSEFQGGFGSISAFQQNLLVPGEFYRNSQGIHQDDKGGERGMPSSDSHLPISNARYADGNTIDSFHVSDFGAFNQSVMHRSDDAVDLSGNSVFNSLKVSSQTISPGPIRIDNSDQLQTSLDKNQFTYQSESQRLQLRKVQSSNLVTISGGNTENQEESAMADASPRTDISTDGDTDDKNQRFDRNLSLPAVASDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSAGDQAHSMSGNGAMAFDVEYARWLEEKNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFKLKSTAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGSPSSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1830 570 FunFam BZIP family transcription factor 284 333 - -
Glsi04g1830 570 SUPERFAMILY Leucine zipper domain 285 328 IPR046347 GO:0003700|GO:0006355
Glsi04g1830 570 ProSiteProfiles DOG1 domain profile. 350 567 IPR025422 GO:0006351|GO:0043565
Glsi04g1830 570 Gene3D - 284 336 - -
Glsi04g1830 570 PANTHER TRANSCRIPTION FACTOR TGA9 218 569 - -
Glsi04g1830 570 MobiDBLite consensus disorder prediction 226 287 - -
Glsi04g1830 570 Pfam Basic region leucine zipper 281 327 IPR004827 GO:0003700|GO:0006355
Glsi04g1830 570 CDD bZIP_HBP1b-like 285 337 - -
Glsi04g1830 570 Pfam Seed dormancy control 367 442 IPR025422 GO:0006351|GO:0043565
Glsi04g1830 570 MobiDBLite consensus disorder prediction 108 132 - -
Glsi04g1830 570 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 283 327 IPR004827 GO:0003700|GO:0006355
Glsi04g1830 570 Coils Coil 361 381 - -
Glsi04g1830 570 SMART brlzneu 281 344 IPR004827 GO:0003700|GO:0006355
Glsi04g1830 570 MobiDBLite consensus disorder prediction 248 262 - -
Glsi04g1830 570 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 288 303 IPR004827 GO:0003700|GO:0006355
Glsi04g1830 570 MobiDBLite consensus disorder prediction 226 244 - -
Glsi04g1830 570 Coils Coil 304 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1830 Glsi-ChrGlsi04 67044364 67081818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1830 239 570 bZIP Transcription Factor Family AT3G12250 81.024 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi04g1830 DOG1 6.2e-33 No_clan