Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1828 ATGGAAAGTTTAGGATGTATAGTGGGAGCCCCCAGTTGGCAGCATCATCGCATCCTTCTTGCATCTTTCTGCATAAAATCTGAGCAGTCAATAACACCATTGTCATCGTCATTGACATTTCTTCGTTGTATAGACAAAAATCAATCTGGAAATGCCTGCTCTACAAAATACCGAATTAGCCCAAGGCCTCTGTTTGCTTTGCCGGATAATAGTGAAGGTGAGCACTCTGAATCAACTGCTAAAGAGGATGAGGATGTTAATGAAGACGAACCGGAACAGCTAGATTTAGGTGGATGGAGGTTGCTTAGTGGAAATTCAGGAATAATATCTTCATGCTTGGTTGGTCTTCTCACTGGCCTCGCTGTTGTGCTCTTCAATAATTTAGTCCATGAAATTCGTGATTTGCTGTGGGATGGGATTCCTGATCGAGGCGCCTCATGGTTGAGAGAAGAGCCTATTCAGGCAACCTGGACTAGAGTTATCCTAGTACCTGCTTTTGGGGGTATGATTGTCGCTTTGTTGAACCTGCTTCTTCTGCGTTTTGATTCTTCTGTGAAGCAAGATCCACTGTTTGGCTCATCTGCTTATCTCAAGTCTGCTTCCCCCCCTTTGCTGAAGGCTATGGCAGCTTGTATTACCTTAGGCACTGGGAATTCCTTGGGGCCTGAGGGTCCCAGTGTTGATATTGGTACCTCCATTGCTAAAGCTGTCAGTTCTTTCTTTGACAAGAATTCTGGAAGAATGCTCTCCCTTTTTGCTGCTGGATCTGCTGCTGGCATCTCTTCCGGTTTCAATGCTGCTGTTGCTGGTTGTTTCTTTGCTGTAGAGCATGTCTTATGGCCATCACCTACAGATGCATCTTTATCACTTACAAATACTACTTCTATGGTAATACTTAGTGCTGTCATAGCTTCGGTGGTTTCTGAGGTTGGCCTGGGTTCTGAACCAGCCTTCAGAGTTCCAGAATATGACTTTCGTTCACCTGGTGAACTCCCACTGTATCTATTACTGGGTATCTTATGTGGCCTGGTGTCATTGGCCCTATCTTGGTGCACTTCATATATGTCGATAACTGTTGACAATCTTCACAAGGCCACTGGGATACCGAGAGCTTCATTTCCTGTATTGGGTGGCTTGTCTGTTGGATTGATAGCATTGGCATATCCTGAAATCCTCTACTGGGGTTTTGAGAATGTTGACCTTTTGTTAGAATCTCGGCCATTTGTCAAGGTTGTTTCTGCTGACCTATTGCTTCAGCTAATAGTAGTTAAGATTGTTGCAACTTCTCTGTGTCGGGCTTCTGGATTAGTGGGAGGGTATTATGCCCCATCTCTCTTTATTGGTGCAGCAACTGGGATGGCATATGGGAAATTCATCGGTTTTGCTATTGCTGAGTTCAATTCTATTAGTCATCTCTCTGTATTGGAAGTGGCACCACCTCAAGCTTATGGCCTGGTTGGAATGGCTGCAACTCTTGCAGGAGTGTGTCAGGTCCCCCTTACTGCCGTTTTGCTTATGTTTGAATTGACACAAGACTATCGGATTGTTCTACCACTACTTGGAGCTGTAGGCTTGTCTTCATGGATGTCATCTGTACAGACAAAGAGAGGAAATGTCTCAGGGACTAAAAAGCTCAATCTAAAAACCTCTAATACAAATATTCTTCCAGAAATATCTTCCCGTGGTTCAATTGACTCATCTATTAATCATTCCCCCGCTAAAAGTGTACCTTATTCAAGTAACTTGTCTCAAGTCAAAAGTTCGCCTTGCGTAGAGGATGATAATGTTGAAACCACATATTTAAGAAGGAAGATATTTGTTTCAGAGGCCATGAAGACCAAATATGTGACAGTCTCAATGTGCACACAGCTTACAGAAGTAGTAAATCTCATGCTTGCAGAGAAACAGTCTTGTGCAGTGATTGTTGGTACTGATCATACTTTGATTGGCTTATTGACGCTTAGAGATATTCAAGAATACAGCAAATTTGCAAAAGCAAGTAGTAAAAAACCCAAGGAACTTTTAGTTTCTGAACTATGCCTTTTACATGGGGGAATATGTAGTGTGCCGTGGACAGCTACTCCTGATATGGATCTTCTTTCTGCTCAAATGGCTATGAAGAAATATGGAGCCAATCAAGTTCCAGTTGTTAGAAAACAGTATGAAAGAGTGTATCCAGTTGGCGTATTAGACACTGACAGTATCAGTCTAACTTGCAGTGCTCTGGCCATTAGAGAGTCTCTCGCTTAA 2250 0.4293 MESLGCIVGAPSWQHHRILLASFCIKSEQSITPLSSSLTFLRCIDKNQSGNACSTKYRISPRPLFALPDNSEGEHSESTAKEDEDVNEDEPEQLDLGGWRLLSGNSGIISSCLVGLLTGLAVVLFNNLVHEIRDLLWDGIPDRGASWLREEPIQATWTRVILVPAFGGMIVALLNLLLLRFDSSVKQDPLFGSSAYLKSASPPLLKAMAACITLGTGNSLGPEGPSVDIGTSIAKAVSSFFDKNSGRMLSLFAAGSAAGISSGFNAAVAGCFFAVEHVLWPSPTDASLSLTNTTSMVILSAVIASVVSEVGLGSEPAFRVPEYDFRSPGELPLYLLLGILCGLVSLALSWCTSYMSITVDNLHKATGIPRASFPVLGGLSVGLIALAYPEILYWGFENVDLLLESRPFVKVVSADLLLQLIVVKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFIGFAIAEFNSISHLSVLEVAPPQAYGLVGMAATLAGVCQVPLTAVLLMFELTQDYRIVLPLLGAVGLSSWMSSVQTKRGNVSGTKKLNLKTSNTNILPEISSRGSIDSSINHSPAKSVPYSSNLSQVKSSPCVEDDNVETTYLRRKIFVSEAMKTKYVTVSMCTQLTEVVNLMLAEKQSCAVIVGTDHTLIGLLTLRDIQEYSKFAKASSKKPKELLVSELCLLHGGICSVPWTATPDMDLLSAQMAMKKYGANQVPVVRKQYERVYPVGVLDTDSISLTCSALAIRESLA 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1828 749 Pfam CBS domain 607 660 IPR000644 -
Glsi04g1828 749 FunFam Chloride channel protein 591 738 - -
Glsi04g1828 749 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 100 740 - -
Glsi04g1828 749 CDD CBS_pair_voltage-gated_CLC_euk_bac 611 736 - -
Glsi04g1828 749 Pfam Voltage gated chloride channel 199 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi04g1828 749 Gene3D Clc chloride channel 103 550 - -
Glsi04g1828 749 SUPERFAMILY Clc chloride channel 108 537 IPR014743 -
Glsi04g1828 749 MobiDBLite consensus disorder prediction 67 89 - -
Glsi04g1828 749 CDD Voltage_gated_ClC 115 527 - -
Glsi04g1828 749 PRINTS Chloride channel signature 206 225 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi04g1828 749 PRINTS Chloride channel signature 499 518 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi04g1828 749 PRINTS Chloride channel signature 481 497 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi04g1828 749 PRINTS Chloride channel signature 436 456 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi04g1828 749 PRINTS Chloride channel signature 257 276 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi04g1828 749 Gene3D - 591 737 IPR046342 -
Glsi04g1828 749 ProSiteProfiles CBS domain profile. 611 667 IPR000644 -
Glsi04g1828 749 SUPERFAMILY CBS-domain pair 602 722 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1828 Glsi-ChrGlsi04 66961907 66980137 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1828 75 278 Ion Channels AT3G27170 26.180 8.58e-06 47.4