Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1818 ATGAAAGTTCCCTGCTGTTCGGTTTGCCAAACGCGGTACAACGAGGAAGAGAGAGTCCCACTTCTGCTCCAATGTGGGCATGGATTCTGCAGAGAGTGTCTTTCGAGAATGTTCTCGGCATCCCCAGATACAACGTTGCCCTGTCCGAGGTGTCGCCATGTGTCCACCGTTGGGAACTCTGTGCAAGCTCTGCGCAAGAACTATGCCGTGCTCGCTCTTATTCACTCGGCTTCAAACGCTTCAGGTTCGAATTTCGATTGTGACTTCACGGACGATGATGAAGAAGGGGGTGATGATGGTGAAGTAGATGGGGACAATGATGAGGACTCGGTCATCCGCCGCAGATGTAGCCGTGGGTCCCAAACATCGAGCTCCGGCGGCTGTGGACCAGTTATTGAAGTTGGGGTGCACCAAGACTTGAAATTGCTGCGGCGGATAGGAGAGGGGCGGAGGGTTGGTATGGAAATGTGGACGGCGGTGATTAGCGGTGGTGGAAATGGACGGTGCCGACATCACGTGGTGGTGAAGAAGGTAACGATAGTGGAGGAGTTGGATTTGGATTGGGTGCAGGGGCAACTTGAGAATCTGCGCCGTGCTTCAATGTGGTGTAGAAATGTATGTACGTTTCATGGGGCAATGAGGATGGAGGAGAGTTTGTGTCTTGTGATGGACCGGTGTTTTGGATCAGTTCAGTCCGAGATGCAGCGCAACGAGGGAAGACTTACTTTGGAGCAAGTCTTAAGATATGGGGCAGACATTGCAAGAGGGGTGGCTGAGCTTCATGCTGCAGGCATTGTTTGCATGAATCTGAAACCATCCAATCTTCTTCTTGATGCAAATGGTCATGCAGTGGTTTCTGATTATGGACTTGCTGCAATTTTGAAGAAGCCTACCTGTCGGAAAGCCCGGCCAGAGTGTGACTCCTCAAAGATCCATTCATGTATGGAGTGTATAATGCTCAGCCCACATTACACAGCTCCAGAGGCTTGGGAACCTGTGAAGAAGTCATTAAATTTGTTCTGGGATGATGCAATAGGTATATCTGCAGAGTCGGATGCCTGGAGTTTTGGTTGTACATTGGTGGAAATGTGCACGGGTTCTGTTCCTTGGGCTGGTTTAAATGCAGAGGAAATTTATCGAGCAGTTGTCAAGGGAAAGAAACTACCACCACAGTATGCTAGTGTGGTTGGTGGTGGAATACCTAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAGTTCAAGCCATCTAAAAGGCCTAGTTTTAATGCAATGTTAGCAATATTTCTTCGTCATTTGCAGGAAATACCGCATAGCCCTCCTGCAAGCCCAGATAATGACTTTGTTAGATGCCCTGTGCCAAAGGTGGTAGAGCCTTCCCCTCTACCTGAATTGGAAGTTCCTCTAGAAAACCCTAACCATCTTCATCGACTTGTGTCTGAAGGGGATGTCAGAGGTGTTAGAGATCTTCTTGCAAAGGCTGCATCAGAAAATGGTAGCAACTACATATCTTCTTTATTGGAAGCTCAAAATGCTGATGGACAGACTGCTCTTCATTTAGCTTGTAGACGTGGTAGTGCAGAACTTGTTGAAGCTATTTTGGAGTACAAAGAGGCGAATGTTGATGTTTTGGACAAAGATGGAGATCCTCCTCTAGTTTTTGCACTAGCAGCTGGATCCCCAGAATGTGTCTGTAGTCTTATCAAAAGAAATGCTAATGTGAGGTCTCGGTTGAGAGATGGCTTGGGCCCTTCTGTCGCTCATGTTTGCGCCTATCATGGTCAACCAGATTGCATGCGAGAATTGCTCTTGGCTGGAGCTGATCCTAATGCAGTGGATGATGAAGGTGAAACTGTACTGCATAGAGCAGTAGCCAAGAAGTATACAGACTGTGCTCTTGTGATATTAGAGAACGGAGGTAGCAGATCAATGGCCATCTTAAATTCAAAGAATCTGACACCACTGCACTTGTGTGTGGCAACATGGAATGTCGCTGTTGTGAAAAGATGGGTGGAAGTTGCAACTTCTGATGAGATTGCTGAAGCACTTGACATACCAAACCCTATTGGCACTGCACTTTGCATGGCCGCTGCTTCTAAGAAAGACCATGAAATTGAAGGGAGAGAACTGGTGCAGATATTGCTTGCTGCAGGAGCAGATCCATCTGCTCAAGATGTGCAGAATGGGCGGACAGCTTTGCATACAGCTGCTATGACTAATGATGTTGAGTTGGTCAAGGTTATTCTTGCTGCTGGTGTTGATGTGAACATTCGCAATGTGCACAACAGTATACCTCTTCACTTAGCTTTAGCTAGGGGAGCAAAGTCGTGTGTTAGATTGCTTCTATCTGCTGGGGCAGATTATAATTTGCAGGATGATGATGGTGACAATGCTTTCCATATAGCAGCAGAGACAGCAAAAATGATACGTGAAAATCTTGATTGGCTCATTGTTATGCTAATAAATCCTGATGCTAATGTTGAAGTCAGAAACCACAGTGGCAAGACACTCCGAGACATCTTAGAGGCCCTTCCCCGAGAATGGATATCTGAAGATCTGATGGAGGCACTAGTCAATAGAGGAGTTCATCTGTCTCTTACAATATTTGAAGTGGGAGATTGGGTGAAGTTTAAAAGAACTGTCACAACTCCAACATATGGGTGGCAAGGTGCTAGACAAAAGAGTGTTGGCTTTGTGCAAAGTGTTCCAGACAGAGATAATCTCATTGTTTCATTTTGTTCTGGGGAGGCTCGTGTTTTGGCAAATGAAGTTGTAAAAGTAATTCCATTAGACAGGGGACAACATGTACAGCTTAAAGAAGAAGTAAAAGAGCCCAGGTTTGGTTGGCGTGGACAGTCACGTGACAGCATTGGGACGGTTTTATGTGTTGACGATGATGGGATCCTCCGTGTTGGATTTCCTGGAGCATCCAGGGGATGGAAAGCTGACCCATCTGAGATGGAACGAGTTGAGGAATTCAAGGTGGGAGACTGGGTTCGCATTCGTCCTACTCTTACATCTGCAAAGCATGGATTAGGATCTGTGACACCAGGAAGCATTGGCATAGTATATTGTATCAGACCAGACAGTAGTCTCTTGATAGAGCTGAGCTATCTGCCAAATCCATGGCTTTGTGAACCTGAAGAGGTTGAGCATGTTGCTCCTTTCAAGATTGGTGATCGGGTATGTGTGAAGCGATCTGTTGCTGAACCTAGATATGCTTGGGGTGGCGAGACACATCATAGTGTTGGAAGAATAAGTGAAATTGAGAATGATGGTTTATTAATAATCGATATACCAAATCGACCCATACCATGGCAGGCTGATCCATCTGATATGGAGAAGGTTGAAGATTTTAAGGTTGGTGATTGGGTCAGAGTGAAAGCTTCAGTGTCTTCTCCAAAATATGGATGGGAGGATATTACAAGGAACAGTATTGGGGTAATTCATAGTTTGGAAGAGGATGGTGATATGGGTATTGCCTTTTGCTTCAGGAGTAAGCCTTTTAGTTGCTCTGTCACTGATGTGGAGAAAGTTCCCCCTTTTGAGGTGGGACAAGAAATTCATGTTATGCCATCTGTTAATCAGCCACGGCTTGGATGGTCAAACGAATCACCAGCTACTGTCGGAAAAATAGTGAGAATTGACATGGATGGTGCTCTGAATGCGAGAGTCACTGGTAGGCAGAGCTTGTGGAAAGTTTCTCCTGGAGACGCAGAATGTCTTCCAGGATTTGAAGTTGGTGATTGGGTACGCTCAAAACCAAGCCTGGGAACCAGACCAAGTTATGACTGGAATAGTGTTGGGAAAGAAAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGATACTTGGAGTTGGCTTGCTGTTTTCGTAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAAGGTTCCTTGCTTTAAAGTTGGGCAGTATGTTAGGTTCCGAACTGGTTTGGCTGAACCAAGGTGGGGATGGAGAGGAGCTCAACCTGAATCTCGAGGTGTTATAACCAGTATTCATGCTGATGGAGAAGTGAGGGTGGCATTCTTTGGTTTGACAGGCTTGTGGAGAGGAGATCCTGCAGACCTTGAGATTGAACAGATGTTTGAAGTGGGAGAGTGGGTGAGGTTAAAAGATAATGCCAATGATTGGAAATCTGTTGGGCCAGGTAGTGTTGGTGTTGTACAAGGAATAGGATATGAAGGTGATGTATGGGACAGAAGCACTCATGTTGCCTTTTGCGGGGAACAAGAAAGGTGGGTAGGACCAACTTCCCATCTTGAAAGAGTTGACAAACTCCTTATTGGACAGAAAGTTAGAGTTAAACAAACTATAAAGCAGCCAAGATTTGGGTGGTCGGGACACACCCATGCTAGTATTGGAACCATATCAACAATTGATGCTGATGGAAAGCTTCGAATATACACTCCAGCAGGATCGAAAGCATGGATGTTGGACCCATCAGAAGTTGATTTGGTAGAAGAGGAGGAGCTCCGTATTGGAGACTGGGTCAAGGTTAGAGAATCAGTTTCAACCCCAACCCATCAGTGGGGAGAAGTGAGTCATTCAAGCATTGGGGTGGTGCATCGGATGGAAGATGACAATCTGTGGGTGGCGTTCTGTTTCATGGATAGGCTATGGCTTTGTAAGGCATGGGAAATGGAACGGGTTAGACCATTTAAAGTGGGGGACAAGGTAAGGATCAGAGATGGACTAGTGTCCCCACGGTGGGGATGGGGAATGGAGACACATGCCAGCAAAGGACAGGTGACTGGAGTAGATGCAAATGGCAAGCTAAGAATTAAGTTCCGTTGGAGGGAAGGAAGGCCCTGGATAGGAGACCCTGCTGATATTGTTCTTGATGAAGATTGGTTTTGA 4887 0.4606 MKVPCCSVCQTRYNEEERVPLLLQCGHGFCRECLSRMFSASPDTTLPCPRCRHVSTVGNSVQALRKNYAVLALIHSASNASGSNFDCDFTDDDEEGGDDGEVDGDNDEDSVIRRRCSRGSQTSSSGGCGPVIEVGVHQDLKLLRRIGEGRRVGMEMWTAVISGGGNGRCRHHVVVKKVTIVEELDLDWVQGQLENLRRASMWCRNVCTFHGAMRMEESLCLVMDRCFGSVQSEMQRNEGRLTLEQVLRYGADIARGVAELHAAGIVCMNLKPSNLLLDANGHAVVSDYGLAAILKKPTCRKARPECDSSKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDAIGISAESDAWSFGCTLVEMCTGSVPWAGLNAEEIYRAVVKGKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPSFNAMLAIFLRHLQEIPHSPPASPDNDFVRCPVPKVVEPSPLPELEVPLENPNHLHRLVSEGDVRGVRDLLAKAASENGSNYISSLLEAQNADGQTALHLACRRGSAELVEAILEYKEANVDVLDKDGDPPLVFALAAGSPECVCSLIKRNANVRSRLRDGLGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGETVLHRAVAKKYTDCALVILENGGSRSMAILNSKNLTPLHLCVATWNVAVVKRWVEVATSDEIAEALDIPNPIGTALCMAAASKKDHEIEGRELVQILLAAGADPSAQDVQNGRTALHTAAMTNDVELVKVILAAGVDVNIRNVHNSIPLHLALARGAKSCVRLLLSAGADYNLQDDDGDNAFHIAAETAKMIRENLDWLIVMLINPDANVEVRNHSGKTLRDILEALPREWISEDLMEALVNRGVHLSLTIFEVGDWVKFKRTVTTPTYGWQGARQKSVGFVQSVPDRDNLIVSFCSGEARVLANEVVKVIPLDRGQHVQLKEEVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPSEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWLCEPEEVEHVAPFKIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIDIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSIGVIHSLEEDGDMGIAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVMPSVNQPRLGWSNESPATVGKIVRIDMDGALNARVTGRQSLWKVSPGDAECLPGFEVGDWVRSKPSLGTRPSYDWNSVGKESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPCFKVGQYVRFRTGLAEPRWGWRGAQPESRGVITSIHADGEVRVAFFGLTGLWRGDPADLEIEQMFEVGEWVRLKDNANDWKSVGPGSVGVVQGIGYEGDVWDRSTHVAFCGEQERWVGPTSHLERVDKLLIGQKVRVKQTIKQPRFGWSGHTHASIGTISTIDADGKLRIYTPAGSKAWMLDPSEVDLVEEEELRIGDWVKVRESVSTPTHQWGEVSHSSIGVVHRMEDDNLWVAFCFMDRLWLCKAWEMERVRPFKVGDKVRIRDGLVSPRWGWGMETHASKGQVTGVDANGKLRIKFRWREGRPWIGDPADIVLDEDWF 1628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1818 1628 ProSiteProfiles Ankyrin repeat region circular profile. 761 793 - -
Glsi04g1818 1628 SMART ANK_2a 761 790 IPR002110 GO:0005515
Glsi04g1818 1628 SMART ANK_2a 688 723 IPR002110 GO:0005515
Glsi04g1818 1628 SMART ANK_2a 728 757 IPR002110 GO:0005515
Glsi04g1818 1628 SMART ANK_2a 615 644 IPR002110 GO:0005515
Glsi04g1818 1628 SMART ANK_2a 547 576 IPR002110 GO:0005515
Glsi04g1818 1628 SMART ANK_2a 794 829 IPR002110 GO:0005515
Glsi04g1818 1628 SMART ANK_2a 650 681 IPR002110 GO:0005515
Glsi04g1818 1628 SMART ANK_2a 582 611 IPR002110 GO:0005515
Glsi04g1818 1628 SMART ANK_2a 513 543 IPR002110 GO:0005515
Glsi04g1818 1628 SMART ring_2 6 51 IPR001841 -
Glsi04g1818 1628 MobiDBLite consensus disorder prediction 86 110 - -
Glsi04g1818 1628 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Glsi04g1818 1628 ProSiteProfiles Ankyrin repeat region circular profile. 513 535 - -
Glsi04g1818 1628 FunFam E3 ubiquitin-protein ligase KEG 727 860 - -
Glsi04g1818 1628 ProSiteProfiles Ankyrin repeat profile. 582 614 IPR002110 GO:0005515
Glsi04g1818 1628 Gene3D - 582 643 IPR036770 -
Glsi04g1818 1628 ProSiteProfiles Ankyrin repeat profile. 761 793 IPR002110 GO:0005515
Glsi04g1818 1628 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 1 1625 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Glsi04g1818 1628 Pfam Ankyrin repeats (many copies) 585 632 IPR002110 GO:0005515
Glsi04g1818 1628 Pfam RING-type zinc-finger 6 49 IPR027370 -
Glsi04g1818 1628 SUPERFAMILY Ankyrin repeat 497 836 IPR036770 -
Glsi04g1818 1628 ProSiteProfiles Protein kinase domain profile. 140 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1818 1628 Pfam Ankyrin repeats (3 copies) 707 792 IPR002110 GO:0005515
Glsi04g1818 1628 Pfam Ankyrin repeats (3 copies) 493 575 IPR002110 GO:0005515
Glsi04g1818 1628 Gene3D Transferase(Phosphotransferase) domain 1 227 442 - -
Glsi04g1818 1628 FunFam E3 ubiquitin-protein ligase KEG 227 443 - -
Glsi04g1818 1628 ProSiteProfiles Ankyrin repeat profile. 513 546 IPR002110 GO:0005515
Glsi04g1818 1628 CDD RING-HC_KEG-like 3 59 - -
Glsi04g1818 1628 Gene3D - 644 768 IPR036770 -
Glsi04g1818 1628 Gene3D - 769 857 IPR036770 -
Glsi04g1818 1628 ProSiteProfiles Ankyrin repeat region circular profile. 728 759 - -
Glsi04g1818 1628 FunFam E3 ubiquitin-protein ligase KEG 453 683 - -
Glsi04g1818 1628 Pfam Protein kinase domain 170 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1818 1628 SUPERFAMILY RING/U-box 5 58 - -
Glsi04g1818 1628 Pfam Mind bomb SH3 repeat domain 993 1113 IPR040847 -
Glsi04g1818 1628 Pfam Mind bomb SH3 repeat domain 1119 1237 IPR040847 -
Glsi04g1818 1628 Pfam Mind bomb SH3 repeat domain 1372 1493 IPR040847 -
Glsi04g1818 1628 Pfam Mind bomb SH3 repeat domain 869 987 IPR040847 -
Glsi04g1818 1628 Pfam Mind bomb SH3 repeat domain 1502 1620 IPR040847 -
Glsi04g1818 1628 Pfam Mind bomb SH3 repeat domain 1245 1366 IPR040847 -
Glsi04g1818 1628 SUPERFAMILY Protein kinase-like (PK-like) 166 430 IPR011009 -
Glsi04g1818 1628 MobiDBLite consensus disorder prediction 87 106 - -
Glsi04g1818 1628 Gene3D - 463 581 IPR036770 -
Glsi04g1818 1628 ProSiteProfiles Ankyrin repeat profile. 728 760 IPR002110 GO:0005515
Glsi04g1818 1628 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Glsi04g1818 1628 PRINTS Ankyrin repeat signature 514 529 IPR002110 GO:0005515
Glsi04g1818 1628 PRINTS Ankyrin repeat signature 777 791 IPR002110 GO:0005515
Glsi04g1818 1628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 84 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1818 Glsi-ChrGlsi04 66540961 66558788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1818 205 438 MAP Kinase Kinase Kinase AT4G18950 27.426 4.26e-17 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Glsi04g1818 Pkinase 4.7e-29 CL0016