Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1816 ATGTCTGAGTCAAATATGGACGAACCGGGGGAAGCTGGAGAAAGGCCAATTTTCAGAGATATTAGACGCTATTTCTGTGAATACTGTGGCATCTGTAGGTCCAAAAAGGCTCTGATAGCCTCTCATATCAATACTCACCACAGGGAGGAGCTTGAAAAAGCAAGAGTTGATAGAGATTGTGAAGCAGAGGGCAAAAAATCCAACACCTGCAAGGAATGTGGTGTTAGTTTCAAAAAACCAGCCTATTTGATTCAACACATGCAAAGCCATTCGCTTGAGAGGCCATATGTGTGTATGGTAGATGACTGTCAAGCAAGTTACAGGAGAAAGGACCACTTGACTCGTCACCTTCTACAGCATCAAGGGAAAACTTTCAAATGTCCATTTGAGAATTGTGACCGTGACTTTGCTTTCCAAGGTAATATGACGAGACATGTCAAAGAATTTCATAGTGAGAATAACACCGGAACTAAAGTTGAACGGCCGAAGCAGTATGTTTGCCCGGAAATTGGCTGTGGAAAAGTTTTCAAATTTGCATCAAAGCTACAAAAGCATGAAAATTCTCATGTTAAACTGGACTCAGTAGAAGTGGTATGCCTAGATCCTGGTTGTATGAAACATTTCACTAATATCCAGTGCCTTCAAGCACATATCAGAACCTGCCATCAATATGTGGCCTGTGAGACTTGTGGGAAAAAGCAACTGAAGAAGAACATTAAGCGGCACCTCCGATTGCATGAAACTGATAGTTCATTGGAGGCATTTAAATGCAAATACAAGGGTTGTAGCTGCACATTCTCGAGTAAATCCAATCTTCATAAGCATGTGAAGGCTGTGCACTTTAAAGAAAAACCTTTTGCGTGTGGGTTTCCTGATTGTAGCATGAGATTCTCTTACAAACATGTGAGGGACAACCATGAAAAAACTGGGTTACACGTTTATACCCATGGGGATTTTGAAGAATCTGATGAACAATTCAGGTCAAGGCCAAGGGGAGGGCGGAAAAGAAAGTTTCCGACAGTTGAAATGTTGGTTAGGAAGAGAGTTATTCCACCCAGTCAATTGGAGCACCGGTTATTTATGGAAGAGATTGACTAG 1098 0.4171 MSESNMDEPGEAGERPIFRDIRRYFCEYCGICRSKKALIASHINTHHREELEKARVDRDCEAEGKKSNTCKECGVSFKKPAYLIQHMQSHSLERPYVCMVDDCQASYRRKDHLTRHLLQHQGKTFKCPFENCDRDFAFQGNMTRHVKEFHSENNTGTKVERPKQYVCPEIGCGKVFKFASKLQKHENSHVKLDSVEVVCLDPGCMKHFTNIQCLQAHIRTCHQYVACETCGKKQLKKNIKRHLRLHETDSSLEAFKCKYKGCSCTFSSKSNLHKHVKAVHFKEKPFACGFPDCSMRFSYKHVRDNHEKTGLHVYTHGDFEESDEQFRSRPRGGRKRKFPTVEMLVRKRVIPPSQLEHRLFMEEID 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1816 365 SUPERFAMILY beta-beta-alpha zinc fingers 82 122 IPR036236 -
Glsi04g1816 365 ProSitePatterns Zinc finger C2H2 type domain signature. 127 150 IPR013087 -
Glsi04g1816 365 SMART c2h2final6 197 222 IPR013087 -
Glsi04g1816 365 SMART c2h2final6 255 280 IPR013087 -
Glsi04g1816 365 SMART c2h2final6 68 90 IPR013087 -
Glsi04g1816 365 SMART c2h2final6 96 120 IPR013087 -
Glsi04g1816 365 SMART c2h2final6 165 189 IPR013087 -
Glsi04g1816 365 SMART c2h2final6 225 246 IPR013087 -
Glsi04g1816 365 SMART c2h2final6 125 150 IPR013087 -
Glsi04g1816 365 SMART c2h2final6 286 312 IPR013087 -
Glsi04g1816 365 SMART c2h2final6 24 46 IPR013087 -
Glsi04g1816 365 ProSitePatterns Zinc finger C2H2 type domain signature. 98 120 IPR013087 -
Glsi04g1816 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 194 IPR013087 -
Glsi04g1816 365 Gene3D Classic Zinc Finger 17 95 - -
Glsi04g1816 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 285 IPR013087 -
Glsi04g1816 365 ProSitePatterns Zinc finger C2H2 type domain signature. 257 280 IPR013087 -
Glsi04g1816 365 SUPERFAMILY beta-beta-alpha zinc fingers 123 151 IPR036236 -
Glsi04g1816 365 Gene3D Classic Zinc Finger 96 122 - -
Glsi04g1816 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 125 IPR013087 -
Glsi04g1816 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 155 IPR013087 -
Glsi04g1816 365 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Glsi04g1816 365 Gene3D Classic Zinc Finger 123 151 - -
Glsi04g1816 365 Gene3D Classic Zinc Finger 152 224 - -
Glsi04g1816 365 ProSitePatterns Zinc finger C2H2 type domain signature. 167 189 IPR013087 -
Glsi04g1816 365 Pfam Zinc finger, C2H2 type 96 120 IPR013087 -
Glsi04g1816 365 Pfam Zinc finger, C2H2 type 125 150 IPR013087 -
Glsi04g1816 365 Pfam Zinc finger, C2H2 type 69 90 IPR013087 -
Glsi04g1816 365 Pfam Zinc finger, C2H2 type 165 189 IPR013087 -
Glsi04g1816 365 SUPERFAMILY beta-beta-alpha zinc fingers 162 191 IPR036236 -
Glsi04g1816 365 Gene3D Classic Zinc Finger 250 327 - -
Glsi04g1816 365 FunFam Zinc finger 45-like 63 91 - -
Glsi04g1816 365 SUPERFAMILY beta-beta-alpha zinc fingers 236 290 IPR036236 -
Glsi04g1816 365 PANTHER ZINC FINGER PROTEIN 10 354 - -
Glsi04g1816 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Glsi04g1816 365 ProSitePatterns Zinc finger C2H2 type domain signature. 288 312 IPR013087 -
Glsi04g1816 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 51 IPR013087 -
Glsi04g1816 365 ProSitePatterns Zinc finger C2H2 type domain signature. 199 222 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1816 Glsi-ChrGlsi04 66499894 66502382 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1816 92 315 C2H2 Transcription Factor Family AT1G72050 52.174 1.10e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi04g1816 zf-C2H2 0.009 CL0361