LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi04g1811	ATGTTCTTACGGCAAAGCTGGGTGCCCAATCTTGATTTCCCAAGCTCTGGGTCGTCACTCCTACTTCTGCAGTTAGGCAAGCTTCTTCCAACATACTATGCTTGCGAAGGGGTGCCTACTTCATTGCAGCAATTTTGGATTGCAACAATGATATACGCTGGACTTAGGCTAGAGTGCCTTGCAGAACAACGAGGTGCTCCCATGGAAGTTAAACACCGAAAGGTTCGCTCCCTGGTAGGGAAGCTTAGCTCTGTTTCAGAGAAAACCCGGGTCGAGACTCTGTGCGAGCTACGCCTCATGACCAAGCAAGACCCCGAGAGCCGTCCTCTGATTGCTGAAGCGGGTGCTATTCCCTACTTGGCTGAGACCCTTTACTCCTCCACGCACGATTCCCAAGAAAACGCAGCAGCCACCCTGCTCAATCTCTCAATCTCCTGCAAAGAGTCTCTCGTGTCCACCCGTGGTGTCCTCGATGCGATTTCGCATGTTCTTTCCCACCATCGATCTACATCTTCGCCCTGTGCTGTGCAATCCTCCGCCGCTACGTTACATAGCCTCCTCCTGGTTGATGACTACCGACCAATAATTGGCTCGAAGCGTGACATCGTGTACGCACTGGCGGATATAATCAAAGTCCTCAATTCGCCATCTAGATCGATCAAGGACGCTCTCAAGGCCTTGTTTGGGATTTCGCTTTACCCGCTTAACAGGAGCACGATGATCCATCTGGGTGCGATTCCGCCCCTTTTTTCTTTGGTTCTGGAGGATGGGAGAGTTGGGATAGTGGAGGATGCCACGGCGGTGATCGCCCAAATCGCGGGTTGTGAAGAGAGTGAGGAGGCGTTTCGGAAGGTTTCGGGAATTGGGGCATTGGTTGATCTTTTGGATTTGGCAACTGGGTCGAGTATGAGGACGAAGGAGAATGCTGTTTCTGGATTGTTGAATTTGGTGATGTGTGGAGGGGAGAAAGTAGTCACGGATGTGCGAGAGAGAGCCATAGGGGTAATGGATGTGATTGCGGATGTGGCGGAAAATGGTAGCACCAAAGGGAAGAGCAAGGCAGTGGAGTTGTTGAAAATGTTGTTTGATGGTGGCAGCAATGGCTATGTATTGAGAGATTCTCGGTTTGATTCCTTACTAAATCAAGCTTCATGA	1155	0.5065	MFLRQSWVPNLDFPSSGSSLLLLQLGKLLPTYYACEGVPTSLQQFWIATMIYAGLRLECLAEQRGAPMEVKHRKVRSLVGKLSSVSEKTRVETLCELRLMTKQDPESRPLIAEAGAIPYLAETLYSSTHDSQENAAATLLNLSISCKESLVSTRGVLDAISHVLSHHRSTSSPCAVQSSAATLHSLLLVDDYRPIIGSKRDIVYALADIIKVLNSPSRSIKDALKALFGISLYPLNRSTMIHLGAIPPLFSLVLEDGRVGIVEDATAVIAQIAGCEESEEAFRKVSGIGALVDLLDLATGSSMRTKENAVSGLLNLVMCGGEKVVTDVRERAIGVMDVIADVAENGSTKGKSKAVELLKMLFDGGSNGYVLRDSRFDSLLNQAS	384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi04g1811	384	FunFam	ARM repeat superfamily protein	69	366	-	-
	Glsi04g1811	384	SMART	arm_5	233	274	IPR000225	GO:0005515
	Glsi04g1811	384	SMART	arm_5	104	144	IPR000225	GO:0005515
	Glsi04g1811	384	SMART	arm_5	275	318	IPR000225	GO:0005515
	Glsi04g1811	384	PANTHER	U BOX DOMAIN-CONTAINING	70	361	-	-
	Glsi04g1811	384	Gene3D	-	51	382	IPR011989	-
	Glsi04g1811	384	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	244	287	IPR000225	GO:0005515
	Glsi04g1811	384	Pfam	Armadillo/beta-catenin-like repeat	104	143	IPR000225	GO:0005515
	Glsi04g1811	384	SUPERFAMILY	ARM repeat	71	380	IPR016024	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi04g1811	Glsi-ChrGlsi04	66356645	66364264	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi04g1811	75	361	U-box Gene Family	AT1G23030	33.333	2.05e-33	129