Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1802 ATGTTAGGCCTCAGAGACCTGGTTCTCATAGCTCCAACTCCTTCCCTTCACCAACAAGGCCAACCCATTTCAGCAGACCAACATTCCAACCTTCCTCTGCCTTCTTCTGCTGCTCTAAGTGTCGGTCTTGGCATTTTTCCTCTTCTCACTGCCACTCCCTGTGTACCTCAGCCTCAGAGCAATGAGGTCCATGAGTGTGGTGGGAATAACGCCAACCCCAATAATTCCAACTATTGGAACCTCAAGATGTGCCCGGAAGCGAGCTCTTCAAAGAAAGGGGTCATCGACGTGGAAGATGATAGCAGCAAAATGGTGATGGAGAGTGAAGAAAATGGGATTTTTGGGGGTGATTTCAGGGTGTGTCAGGATTGTGGGAACAGGGCGAAGAAAGATTGTAGCTATAGAAGATGCAGGACTTGTTGCAAGGGACGTGGGTATGATTGCAGCACTCACCTGAAGAGCACGTGGGTCCCGGCGGCACGGCGGCGAGAGCGGCAGATGATGGTTGTTTCCGGTGGCGGTGGTTGTACCGGTCTTGGTGCCCATTCTGGGTCGCCTCCTGGTTCTCATAAGAGGCCTAGAGCTATGGGGTCATCACAGAACGCCACTGCTACTTCTCATAGTTCTGCCTCCAACGCTACCACACCAAGGAGCTTGGATATTAGCTCTTGTCACCAAGATGCTAGCTTCAAACAGTCCTTACCAGGACAAGTTCGTGCTCCTGCAGTCTTCAGGTGCCATAGAGTCTCTGCTATTGGCAATGGAGAAGATGAAATTGCCTACATGGCCACAGTCCATATTAGTGGCCATATTTTCAAGGGGTTTCTCTATGATCAAGGTAAAAATGCAATCCCCTGTGCTTCAGAGCTTCAACTGGGAAACTATAGCAGTGGAAAGAATAATAAGGAATGTTCTTCTCCAATTGGGATTCCAACTACTAATGCCTACCCTGCTTCTGGCTGCTGA 966 0.4969 MLGLRDLVLIAPTPSLHQQGQPISADQHSNLPLPSSAALSVGLGIFPLLTATPCVPQPQSNEVHECGGNNANPNNSNYWNLKMCPEASSSKKGVIDVEDDSSKMVMESEENGIFGGDFRVCQDCGNRAKKDCSYRRCRTCCKGRGYDCSTHLKSTWVPAARRRERQMMVVSGGGGCTGLGAHSGSPPGSHKRPRAMGSSQNATATSHSSASNATTPRSLDISSCHQDASFKQSLPGQVRAPAVFRCHRVSAIGNGEDEIAYMATVHISGHIFKGFLYDQGKNAIPCASELQLGNYSSGKNNKECSSPIGIPTTNAYPASGC 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1802 321 Pfam Domain of unknown function (DUF702) 120 282 - -
Glsi04g1802 321 NCBIfam LRP1 C-terminal domain 234 280 IPR006511 -
Glsi04g1802 321 NCBIfam putative zinc finger domain, LRP1 type 120 162 IPR006510 -
Glsi04g1802 321 MobiDBLite consensus disorder prediction 175 220 - -
Glsi04g1802 321 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 76 303 IPR007818 GO:0003700|GO:0006355
Glsi04g1802 321 MobiDBLite consensus disorder prediction 194 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1802 Glsi-ChrGlsi04 66103501 66105025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1802 1 316 C2H2 Transcription Factor Family AT5G12330 43.168 1.07e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Glsi04g1802 DUF702 5.7e-56 No_clan