Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1770 ATGAAGAAGAAACTTGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAAGACATTGGGAAAATAGCATTAGCAGTGCCTGTTTTAGTTTCAAAAGCTCTAGAGCTATTTTTGCAAGATCTTTGTGATCATACTTATGAAATAACTCTTCAGAGAGGAGCAAAGACCATGAATGCATTGCATTTAAAGCATTGTGTCCAAAGCTATAATGTCTTTGATTTTCTGAGGGATGTTGTCACCAGGGTTCCTGACTATGGTCATGGTCATGGCCATGGCCATGGCCATTCTGAGGCGGGTGCTGATGATCGAGCCCTTTCAAAGAGGAGGAAAGCAGCCAGTGATAATTGCAATGACAGTGATGAGGAGTCTAAGAGAAGCAAGATGCATGAGTTGAATCACACTGGCAGTACTGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGCCGTGGTCGTGGGGCTAAGACTGTAGAAAGAGAGACCTGTCGTCAGGAGTTTGAATCTGAGCTTTGCGCTTCTGTTCAGCACAGCAGCAAACATAATCCTAATACAAGTATTGGAATAGATAATGCTTTAGAGTCAAAGGAGTCACCAAAGGAGAATATTACAGCTGTTGGGGAAGGCACTCAAACAACTGTCGGTAACATCAATCTGAATGCCAACATGAACGAAAATGAGGACAAAATTGCTGGCACAGCAGCTAAGGCCTTGTTGCCCGAAACTCCGACTGAGACTAAACATGAAGAGATTCCAGGCTGGTCTATTTCTGATGCGGACAAGATGGCCATTGACTCAATGCAACTTGCACAGATCGGTAGAAGGCTAGACGAGGATGAGGAAGATTATGACGAGGAAGGGTAA 873 0.4467 MKKKLDTRFPAARIKKIMQADEDIGKIALAVPVLVSKALELFLQDLCDHTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDVVTRVPDYGHGHGHGHGHSEAGADDRALSKRRKAASDNCNDSDEESKRSKMHELNHTGSTGRGRGRGRGRGRGRGAKTVERETCRQEFESELCASVQHSSKHNPNTSIGIDNALESKESPKENITAVGEGTQTTVGNINLNANMNENEDKIAGTAAKALLPETPTETKHEEIPGWSISDADKMAIDSMQLAQIGRRLDEDEEDYDEEG 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1770 290 MobiDBLite consensus disorder prediction 91 203 - -
Glsi04g1770 290 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Glsi04g1770 290 SUPERFAMILY Histone-fold 3 96 IPR009072 GO:0046982
Glsi04g1770 290 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Glsi04g1770 290 MobiDBLite consensus disorder prediction 91 141 - -
Glsi04g1770 290 MobiDBLite consensus disorder prediction 155 170 - -
Glsi04g1770 290 MobiDBLite consensus disorder prediction 243 262 - -
Glsi04g1770 290 FunFam dr1-associated corepressor homolog 1 86 - -
Glsi04g1770 290 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 122 - -
Glsi04g1770 290 MobiDBLite consensus disorder prediction 172 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1770 Glsi-ChrGlsi04 65132928 65142938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1770 1 279 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.853 1.49e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Glsi04g1770 CBFD_NFYB_HMF 2.1e-19 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1770 04 65132928 65142938 Glsi04g1770 04 65132928 65142938 ECH