Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1769 ATGGCAACTCATGGTGTTATAGATCGTTGTGATCTCTCTGAGTCCTCTAGCATCTCAGAAGGAAATTCCCGGAAAGAAGGTGCTGAAAATCATTATCATCAGAAGAAGATCATGATCAAAGTAAATGATCATCAAAAGGATCTCAAATCTGAACCAGATCAAGCTTCCAGGTCCAACTCCTCTCATGTCTTGCTGGATTTCATGAAGCTTTCAAGCAATGAAGATGATTCGGTTCGTGGGTCGTCGAAGGTAGAACTGGATTTCTTCAAGGGTTCACCTTCTTCTAGGGCAGCAAACATTAATGATAACGAAGGCACAGGCGAGAACAAGACATCATCGGATCAGCCGAGGACTTTCTCCTGCAATTTTTGCAAGAGAGAGTTCTCTTCCTCCCAAGCTCTTGGAGGGCACCAAAACGCACACAAACAAGAGCGTGCACTGGCGAAACGGCGTCAAGGGATTGATGTCGTTGGGGGTGCTTTAGGGCACCCTCATCATCACTTTCCTTATTACCCTTATCCTAGCCTCTCTGCACTCCCTCTTTATGGGTCCTTCAATAGGGCACTTGGGGTTCGAATGGAATCCATGATTCACAAACCTAATAATTATCCTTGGACCTCATCTGCAGGCTACAACAGGTTCGGCCACGGGTGGTCAAGGGCTCAGGCCGCGATGAACCCATCAGCCCTTGATCATAGGCTGAAGATGGTGCAGGAGGGTTTGCAAGCACATGGTGGTGGTGGTGGAGGGTTTAGTGCTGCTACTTCTTCCAGGCTAGAGGATAGTGGTGGTGTTCCTCTTCGCCAACATGGCGATTCTTCTTCAACTGTTGCCGCCATCACCAATAAGCCAACCTCAACTACTACCGATGATCATCGTTATGTCAAGCCAGAAGAACCCTCCAAAGTTGATAATAATAATTATCCTGAATCTTCTGGGCTCGATTTGTCACTTAAGCTTTGA 963 0.4694 MATHGVIDRCDLSESSSISEGNSRKEGAENHYHQKKIMIKVNDHQKDLKSEPDQASRSNSSHVLLDFMKLSSNEDDSVRGSSKVELDFFKGSPSSRAANINDNEGTGENKTSSDQPRTFSCNFCKREFSSSQALGGHQNAHKQERALAKRRQGIDVVGGALGHPHHHFPYYPYPSLSALPLYGSFNRALGVRMESMIHKPNNYPWTSSAGYNRFGHGWSRAQAAMNPSALDHRLKMVQEGLQAHGGGGGGFSAATSSRLEDSGGVPLRQHGDSSSTVAAITNKPTSTTTDDHRYVKPEEPSKVDNNNYPESSGLDLSLKL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1769 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Glsi04g1769 320 MobiDBLite consensus disorder prediction 92 116 - -
Glsi04g1769 320 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Glsi04g1769 320 MobiDBLite consensus disorder prediction 24 53 - -
Glsi04g1769 320 MobiDBLite consensus disorder prediction 243 320 - -
Glsi04g1769 320 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 320 IPR044246 GO:0009788
Glsi04g1769 320 MobiDBLite consensus disorder prediction 268 288 - -
Glsi04g1769 320 MobiDBLite consensus disorder prediction 94 116 - -
Glsi04g1769 320 SUPERFAMILY beta-beta-alpha zinc fingers 117 146 IPR036236 -
Glsi04g1769 320 Gene3D Classic Zinc Finger 96 156 - -
Glsi04g1769 320 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1769 Glsi-ChrGlsi04 65103491 65104453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1769 100 203 C2H2 Transcription Factor Family AT5G25160 44.340 3.69e-22 91.3