Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1758 ATGCTCCATCTATGGCCATTTACCTTCACATTCTTCCTCCACTTTCTCTTAGTTGCAGCCCAGAACATTAGCAGCAGCAGCAGCGGCACACTGCCACTTGATTATCGCTATGCTTGTTTAGACCAGAGTGGCATAGCTCCCTCGAGCACCTACCAAGCCAACCTCAACAATCTCATCTCTTCTCTCTCATCTGATACTTCGTCGAGCAATGGCTTTAGCAACAGAACTTCAGGTAGTGAAGATGATCAGAGAAATATGGTTTATGGCCTGTACCTTTGCAGAGGGGACGTTAACAGCAGCCTATGCCATTCTTGCGTCCAAAACTCCAGTAGATTGATCAAGCAACATTGTCCAAACAATGCTTCAGCCATTTTGTGGTACCCGTTTTGCCTGCTGAGGTACTCAAACCAGAATTTCTTTGGCAAAATCACCTTAACCCCAAGGATTCCCATGTTTGACGCAGCACAGAACTTCACAAGCGCAGGAGAGTTTGACAGCGATGCTAGGATTCTTATGAATGGTTTGATTCAGACAGGTGCAGAGACAAAATTAATGTTTGGAACTCACATGTTTAACATTAATGGCACCCAGAAAAGGTATGGTTGGGTTCAGTGCAGCAGAGACCTTACTGGTGAGGAATGCAGAACATGTTTGAGTAATATGCTTGAGGAAGTTGAAGATTGCTGTGAGGGAAAGAGGGTATGGAGAGTGTTTTCTCCGAGTTGTATTGTGATGTATGAGACTCAGCCTTTCTTTGTGGGTGACACAGGGCCATCTGCACCTGCCTCTCAACCAGGCAAAGAACAGAGTAACATAAGTTCTATTCTTATAATTATCATTGTTGTAAGCGGAGTGGCAGTAATAGCTCTCCTGGTTTTCTGCACAGTTTACTTCAGATGCTTAAGAAGAAAAAAAGAAAAACAAGCAATACAGGAAGATGGGCTAAATCCAGTATTTTCTCAAGATCAAGTTGATAGGGAGGACTCTATGAATGCTGACCTTCCGATGGTGCCTCTGATTACTATACTAAAAACTACCCGTGATTTTTCTGATGAATGTAAATTGGGAAAAGGTGGATTCGGATCTGTTTACAAGGGTGTTCTGCCGGATGGAAGGGAAGTAGCTGTTAAAAGGCTCTCAAAAACTTCAGGTCAAGGTTTAAAGGAGTTCAAGAATGAAGTGATCTTGATTGCGAAATTACAACATCGAAACCTCGTAAGACTCTTGGGTTGTTGCATTGAGCAAAACGAAAAGCTACTTGTGTATGAGTACATGTCCAATTCTAGCCTTGATTTTCACCTATTTGATACAGAGAAGCGTTCAAAGCTGGAATGGAAACTGCGATTAAGCATCATTAATGGGATTGCAAAAGGGCTTTTGTATCTTCACGAGGACTCTCGACTTAGAGTTATTCACAGAGACCTAAAAGCTAGCAATATCTTATTAGATAATGGAATGAATCCAAAAATCTCTGACTTCGGATTGGCAAGAACTTTTGGAGGAGACCAAAGGCAGGCAAATACAGTAAAAGTTGTGGGTACATATGGGTACATGGCTCCAGAGTATGCTATGGAAGGCTTGTTTTCAGTGAAGTCTGATGTTTTCAGCTTTGGAGTTCTTCTATTAGAAATTATCAGTGGAAAGAAGAACAGTGGATTCTATCTTTCAAAACATGGTCAAAGCCTTCTGATTTATGCATGGAAGCTCTGGCATAAAGGCAAAGGCTTAGAATTGATGGATCCATTACTAGAAAGGTCATGCGCACCTACAGAAGTTGTTAAGTGCATACACATTGGTTTGCTGTGTGTTCAAGAAGATGCAGCAGATAGACCTACCATGTCAAATGTTGTTCTTATGCTTGCAAGTGACTCAGTGACCCTTCCCAAGCCCACACAGCCTGCATTTTCTGTTGGAAGATCTTTCATGGAAAAAGAGTGTTTAGCAAACAATTCTATTCATGACTCTATCAATGAAATAACAGTTTCTGAAGTCGAACCCAGGTGA 2004 0.4182 MLHLWPFTFTFFLHFLLVAAQNISSSSSGTLPLDYRYACLDQSGIAPSSTYQANLNNLISSLSSDTSSSNGFSNRTSGSEDDQRNMVYGLYLCRGDVNSSLCHSCVQNSSRLIKQHCPNNASAILWYPFCLLRYSNQNFFGKITLTPRIPMFDAAQNFTSAGEFDSDARILMNGLIQTGAETKLMFGTHMFNINGTQKRYGWVQCSRDLTGEECRTCLSNMLEEVEDCCEGKRVWRVFSPSCIVMYETQPFFVGDTGPSAPASQPGKEQSNISSILIIIIVVSGVAVIALLVFCTVYFRCLRRKKEKQAIQEDGLNPVFSQDQVDREDSMNADLPMVPLITILKTTRDFSDECKLGKGGFGSVYKGVLPDGREVAVKRLSKTSGQGLKEFKNEVILIAKLQHRNLVRLLGCCIEQNEKLLVYEYMSNSSLDFHLFDTEKRSKLEWKLRLSIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDNGMNPKISDFGLARTFGGDQRQANTVKVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGKKNSGFYLSKHGQSLLIYAWKLWHKGKGLELMDPLLERSCAPTEVVKCIHIGLLCVQEDAADRPTMSNVVLMLASDSVTLPKPTQPAFSVGRSFMEKECLANNSIHDSINEITVSEVEPR 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1758 667 ProSiteProfiles Gnk2-homologous domain profile. 146 251 IPR002902 -
Glsi04g1758 667 FunFam Liguleless narrow1 425 628 - -
Glsi04g1758 667 ProSiteProfiles Protein kinase domain profile. 349 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1758 667 CDD STKc_IRAK 355 620 - -
Glsi04g1758 667 Gene3D Phosphorylase Kinase; domain 1 313 424 - -
Glsi04g1758 667 SUPERFAMILY Protein kinase-like (PK-like) 333 637 IPR011009 -
Glsi04g1758 667 FunFam Cysteine-rich receptor-like protein kinase 10 149 251 - -
Glsi04g1758 667 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 316 424 - -
Glsi04g1758 667 Pfam Protein tyrosine and serine/threonine kinase 353 618 IPR001245 GO:0004672|GO:0006468
Glsi04g1758 667 Gene3D - 33 139 IPR038408 -
Glsi04g1758 667 Gene3D - 150 251 IPR038408 -
Glsi04g1758 667 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Glsi04g1758 667 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 662 - -
Glsi04g1758 667 ProSiteProfiles Gnk2-homologous domain profile. 33 139 IPR002902 -
Glsi04g1758 667 SMART serkin_6 349 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1758 667 Pfam Salt stress response/antifungal 156 248 IPR002902 -
Glsi04g1758 667 Pfam Salt stress response/antifungal 45 137 IPR002902 -
Glsi04g1758 667 Gene3D Transferase(Phosphotransferase) domain 1 425 628 - -
Glsi04g1758 667 FunFam Cysteine-rich receptor-like protein kinase 28 35 138 - -
Glsi04g1758 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1758 Glsi-ChrGlsi04 64439666 64448456 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1758 11 667 Receptor kinase-like Gene Family AT4G21410 41.765 6.59e-171 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi04g1758 PK_Tyr_Ser-Thr 1.3e-49 CL0016