Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1752 ATGGGAACAAAACTCACTGTAAGATCATCAACCATCCTGGGATTGCTGATCAGTTTCATAGCCCTCACCAAAACAAGCACTGCTCAAGCACCAAACTATGTGGGTGATTACTGCCATAACTCAACCCAACAATCTCTCTCTGGTTCATACAAAACCAACCTTAACATGGTCCTCTCATGGCTATCCACTGATGCAGCCACAAGCAAAGGTTACAACCACACCAGCATAGGCGGCAATGGATCCGGCAACGCTGTGTATGGCCTCTACGATTGCCGAGGGGACGATGCAGGATACTTCTGTCAATTCTGTGTCTCAACTGCCAGCAGAGAAGTTCTCCAACGTTGTCCAAACCGATTATCTGCTGACATATGGTATGATTTCTGCATGCTTCGCTACTCCGACAAGAATTTCCTTGGAAATGTGACAATAAACCCATCATGGCATGCTTTCGGGTCCAAAAACATCTCGGATCCAACCGAGCCTAAGAAGGCCGAGGATTATATGAGGAGTTTGATAAGAAAAGCAACCCAGGAGACTAACCCGTTGTTTGCCATGGGTGGGTTCGATTTGAGTCCAGGGAAAAGAAGGTATGGGTTGGTGCAGTGCAGTCGAGACCTTACTAATGAGGGGTGCAGGCAGTGCTTGGAGGCTATGGTGGATAAAGTTCCTCAGTGTTGTGAGAAGAAGCAGGGATGGCAGGTTTTGGCTCCAAGTTGTTTGATAAAGTACGATGATTTTATGTTCTACCAGCTTAATAATCATCAAACATCGTCGTCTTCTACAACCAAGAATGATGTTAGCAAGTCAAAAGTCTTGATAACCAGCGCAAGTGTAATAGCGGCAACAGTTATACTAAGTTGCTTTGCCTACTGCTACTGGAGAAGGAAGAAAAGGTTAAGTAGAGATGAAATGTTATCAGAGACCACTCCTATATCTTTTCATGACTTTTATCAAAGGGAGAGTTTATTGAACACAGACCTTCCTACCATCCCCTTAATCACAGTTCAACAGAGTACTCATCATTTTTCAGAAGAATCTAAATTGGGAGAAGGTGGATTTGGTCCTGTTTACAAGGGAACTTTACCAGATGGGAGGGAAACTGCTGTCAAAAGGCTCTCAAAAACTTCTGTTCAAGGTTCAGAGGAGTTTAAGAATGAAGTAATATTCATAGCCAAATTGCAGCATAGAAACCTTGTTAGGCTCTTGGGTTGCTGCATTGAGGAAAATGAAAAGCTACTTGTCTATGAGTACATGCCAAATTCTAGCCTTGACTTTCATCTTTTCAATGAGACAAGAAGAAAGCAACTATATTGGAAACTAAGACTCAACATTATTAATGGAATTGCACGAGGAATTCTATACCTTCACGAGGACTCTCGCCTTAGAGTAATCCATAGAGATCTAAAAACCAGCAATATCCTTTTGGACCATGAGATGAATCCTAAAATATCAGATTTTGGATTGGCAAGGACATTTGAAAGAGGCCAAAACCAAGGAAATACAAGAAGAGTAATGGGTACTTATGGATATATGTCTCCGGAGTATGCTATGGAAGGATTATTTTCAGTAAAATCTGATGTATTCAGCTTTGGAGTTCTTCTACTAGAAATTATCTCAGGGAAAAAGAATAGTAGTTTCTATCTTTCAGAACATGGTCAAAGTCTTCTTATTTATACTTGGAAACTGTGGTGTGATGGAAAATGTTTGGAATTGATGGATCCAACATTGGAAAAGTCATACACAGTCGATGAAGTTTTGAAGTGCATACACATTGGTTTGCTGTGTGTTCAAGAAGATGCAGCAGATAAACCAACTATGTCGACTGTAGTTGTTATGCTGGCCAGTGAATCAATGAAACTTCCCAAACCTAACCAGCCTGCATTCTCAATTGGACGAATGGCCCTAGGTGAATCATCTACATCAAAAAATTCCAAGGATCCTTCTATTAATGATGTAACAGTGACTCAAATTACTCCAAGGTAA 1983 0.4115 MGTKLTVRSSTILGLLISFIALTKTSTAQAPNYVGDYCHNSTQQSLSGSYKTNLNMVLSWLSTDAATSKGYNHTSIGGNGSGNAVYGLYDCRGDDAGYFCQFCVSTASREVLQRCPNRLSADIWYDFCMLRYSDKNFLGNVTINPSWHAFGSKNISDPTEPKKAEDYMRSLIRKATQETNPLFAMGGFDLSPGKRRYGLVQCSRDLTNEGCRQCLEAMVDKVPQCCEKKQGWQVLAPSCLIKYDDFMFYQLNNHQTSSSSTTKNDVSKSKVLITSASVIAATVILSCFAYCYWRRKKRLSRDEMLSETTPISFHDFYQRESLLNTDLPTIPLITVQQSTHHFSEESKLGEGGFGPVYKGTLPDGRETAVKRLSKTSVQGSEEFKNEVIFIAKLQHRNLVRLLGCCIEENEKLLVYEYMPNSSLDFHLFNETRRKQLYWKLRLNIINGIARGILYLHEDSRLRVIHRDLKTSNILLDHEMNPKISDFGLARTFERGQNQGNTRRVMGTYGYMSPEYAMEGLFSVKSDVFSFGVLLLEIISGKKNSSFYLSEHGQSLLIYTWKLWCDGKCLELMDPTLEKSYTVDEVLKCIHIGLLCVQEDAADKPTMSTVVVMLASESMKLPKPNQPAFSIGRMALGESSTSKNSKDPSINDVTVTQITPR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1752 660 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 25 658 - -
Glsi04g1752 660 ProSiteProfiles Gnk2-homologous domain profile. 32 137 IPR002902 -
Glsi04g1752 660 CDD STKc_IRAK 348 613 - -
Glsi04g1752 660 MobiDBLite consensus disorder prediction 636 660 - -
Glsi04g1752 660 Gene3D Transferase(Phosphotransferase) domain 1 418 625 - -
Glsi04g1752 660 Gene3D - 31 137 IPR038408 -
Glsi04g1752 660 Gene3D - 146 248 IPR038408 -
Glsi04g1752 660 FunFam Cysteine-rich receptor-like protein kinase 10 146 248 - -
Glsi04g1752 660 Pfam Domain of unknown function (DUF3403) 615 660 IPR021820 GO:0004674
Glsi04g1752 660 ProSiteProfiles Gnk2-homologous domain profile. 143 248 IPR002902 -
Glsi04g1752 660 SUPERFAMILY Protein kinase-like (PK-like) 328 630 IPR011009 -
Glsi04g1752 660 SMART serkin_6 342 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1752 660 Gene3D Phosphorylase Kinase; domain 1 308 417 - -
Glsi04g1752 660 ProSiteProfiles Protein kinase domain profile. 342 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1752 660 FunFam Cysteine-rich receptor-like protein kinase 28 34 136 - -
Glsi04g1752 660 Pfam Protein tyrosine and serine/threonine kinase 345 548 IPR001245 GO:0004672|GO:0006468
Glsi04g1752 660 Pfam Salt stress response/antifungal 164 244 IPR002902 -
Glsi04g1752 660 Pfam Salt stress response/antifungal 38 134 IPR002902 -
Glsi04g1752 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Glsi04g1752 660 FunFam Liguleless narrow1 418 621 - -
Glsi04g1752 660 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 309 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1752 Glsi-ChrGlsi04 64150570 64157132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1752 13 660 Receptor kinase-like Gene Family AT4G05200 41.716 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi04g1752 PK_Tyr_Ser-Thr 1.7e-46 CL0016