Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1750 ATGACTGCAGGGCCTCAGAGGGTAGTGGTGATCCGGGATGCATCAAGAGATGTTAGTGTAAAAGGAATAAAAAAGGCCCTGAAGGAGATGTCTCTTCAGCCTGGAGATGAGCTTACTATTATAGCAATTCTTGATCGGTTTAGTAGTCCCATGGGATACAAGATCAGTTTGGATAACAGTGCATTTATTGCAACAACCAACAAAATTGTTGAGAAGGAATTAGCCAGGAAAAAGGAAGACTATCGTAATAATCAACATATCATGAAACTCTCTCAGTACTGTGAAACAAGAAAGATTGTATTCCACATAGAAGTGGTTCCAGGCTCTTCCCCAGAGGTTGCTTCTAGTGCTGCCAAAAGTTCAGGGGTGACATGGTTGATACTTGATAGACAGATGAACAAAGATATGAAGAATTTCATGGACCGGCTACCATGTGGCTTGTACAGAGTAAGAAGTGACAATTCCATTCAAAAGTTGAAAGATCCAACAGTAACAACAAACACCGAATCACTTACTGCTAGGAAAGCTCAAGTAAGGTCTAAGGAAATGTTACCTGGTAGCCTAGAGGAAGAACATTCTCCTGAGAGGCCTAGGTCATCATCAAGTCAGCAATTCACAGTAACTGGAGCTTCAAGTAATTGGAATACTGAAGCCTCAAGTTCTAGCATTTCAGGAGCAATGTTACATTTTTCAAAATACCAAGAGCAAGCAAATGTTCCAAATATAGAACAAGAAACAACAGGGATATTTCACGTGTCTGACCAACATGAGCAGCAGAGAAGCGATAATGAAGCATCTGAGATGGTGGAAGAATTTACAGGCCCACTTTGTTCTGTGTGCAAGAAAAAACGACCAAAAATTGGATGGAAGAGAGACTTCAGTCACGCAGAGCTGTACACAGCCACACAGGGGTTTTCCCTAAAGAACTTTCTGTCGGAAGGTGGATTTGGATCTGTCTACAAAGGAGAGCTGAATGGAATTACAATTGCTGTCAAGCAACATAAAAATGCAAATCTCCAAGGAGAGAAAGAATTTAAGTCTGAAGTCAATGTACTTAGCAAAGCAATACATGAGAATGTGGTCATGCTTCTGGGGTCTTGCTCAGAAGGAAGTAATAGGCTTCTTGTCTATGAATTCGTCTGCAATGGTTCACTGGACCAACATCTATCACAACACTCTCGGATGCCTCTTAGTTGGGAAGATAGGATCAAAGTTGCCCATGGAGCTGCTAAAGGCTTACTCTACTTGCATGAGAATAACATCATACACAGAGATATGAGACCAAACAATATTCTTATCACACATGATCATCAACCACTGCTGGGAGACTTTGGTTTGGCAAGAACTCAACACAAAGACTCGATACACTCAACTGAGGTGGTTGGAACTTTGGGCTATTTGGCACCAGAATATGCAGAATATGGCAAAGTGTCAGCCAAGGCAGATGTATATTCTTTTGGGGTGATTCTACTACAGCTAATAACTGGAATGAGGACGACAGACAAACGACTTGGAGGGAGAAGTCTTGTAGGATGGGCAAGACCATTATTAAAAGAAAGGAATTATCCAGATTTATTTGATGAAAGGATCATGAATTTTGATGATTTCCATCAACTATTTTGGATGGTCCGAATAGCAGAAAAGTGTCTAAGCAGAGATCCTCATAAGAGATTAAATATGATTGCGGTGGTTAATGCTATAACTCGCATAATGGATGGCAACACATGCGGTAACATTTTGAGGGACTCTTCCCCAGCAAGATTTGACTCATTCTATAGCACATCAGACTCTGATGAAGAAGGTGAGATGCAGGAATCCTTTGAATTAGAAGGTGAGTTAGAAAGTCTAAGCACAAGTTCTACATCAAGTAATAGCATGAGTATAATGAGTCAGATGACTGTAAGACTCCCACCATCCCCTCCAATTGAGAGAACCTCTTCAAGTAGATCAAACACATTTGTGGTGTATGAAGAATCAACTCCTGAAATTATTGAAGATTAA 2001 0.4063 MTAGPQRVVVIRDASRDVSVKGIKKALKEMSLQPGDELTIIAILDRFSSPMGYKISLDNSAFIATTNKIVEKELARKKEDYRNNQHIMKLSQYCETRKIVFHIEVVPGSSPEVASSAAKSSGVTWLILDRQMNKDMKNFMDRLPCGLYRVRSDNSIQKLKDPTVTTNTESLTARKAQVRSKEMLPGSLEEEHSPERPRSSSSQQFTVTGASSNWNTEASSSSISGAMLHFSKYQEQANVPNIEQETTGIFHVSDQHEQQRSDNEASEMVEEFTGPLCSVCKKKRPKIGWKRDFSHAELYTATQGFSLKNFLSEGGFGSVYKGELNGITIAVKQHKNANLQGEKEFKSEVNVLSKAIHENVVMLLGSCSEGSNRLLVYEFVCNGSLDQHLSQHSRMPLSWEDRIKVAHGAAKGLLYLHENNIIHRDMRPNNILITHDHQPLLGDFGLARTQHKDSIHSTEVVGTLGYLAPEYAEYGKVSAKADVYSFGVILLQLITGMRTTDKRLGGRSLVGWARPLLKERNYPDLFDERIMNFDDFHQLFWMVRIAEKCLSRDPHKRLNMIAVVNAITRIMDGNTCGNILRDSSPARFDSFYSTSDSDEEGEMQESFELEGELESLSTSSTSSNSMSIMSQMTVRLPPSPPIERTSSSRSNTFVVYEESTPEIIED 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1750 666 PANTHER OS01G0253100 PROTEIN 199 571 - -
Glsi04g1750 666 ProSiteProfiles Protein kinase domain profile. 305 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1750 666 Pfam Protein tyrosine and serine/threonine kinase 307 564 IPR001245 GO:0004672|GO:0006468
Glsi04g1750 666 ProSitePatterns Tyrosine protein kinases specific active-site signature. 421 433 IPR008266 GO:0004672|GO:0006468
Glsi04g1750 666 MobiDBLite consensus disorder prediction 633 666 - -
Glsi04g1750 666 MobiDBLite consensus disorder prediction 633 657 - -
Glsi04g1750 666 MobiDBLite consensus disorder prediction 159 218 - -
Glsi04g1750 666 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 380 582 - -
Glsi04g1750 666 FunFam Proline-rich receptor-like protein kinase PERK8 267 379 - -
Glsi04g1750 666 MobiDBLite consensus disorder prediction 159 174 - -
Glsi04g1750 666 Gene3D Transferase(Phosphotransferase) domain 1 380 581 - -
Glsi04g1750 666 MobiDBLite consensus disorder prediction 198 218 - -
Glsi04g1750 666 SUPERFAMILY Protein kinase-like (PK-like) 291 569 IPR011009 -
Glsi04g1750 666 Gene3D Phosphorylase Kinase; domain 1 278 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1750 Glsi-ChrGlsi04 64077154 64085488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1750 293 590 Trihelix Transcription Factor Family AT5G38560 45.016 1.02e-74 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Glsi04g1750 PK_Tyr_Ser-Thr 3.3e-46 CL0016