Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1747 ATGAATCAAACGACAAATGCAATTGAGGATGAGATTTTCCTCAAGGGTCAGACTGGGTCACAATTGAATTATGAGAGTAATGGAGGAAGTGCTGAGATAGTTGCCTTGAAGAAAGGGCCATGGACATCTGCTGAAGATGCTATTTTAGTAGACTATGTCAAGAAACATGGGGAGGGGAACTGGAATGCTGTTCAGAAGCACTCAGGTCTGTCCCGTTGTGGCAAAAGCTGCCGGCTGCGGTGGGCAAATCATCTAAGGCCAAATTTAAAGAAAGGCTCGTTTACTGCAGAAGAAGAGCGGCTGATTACTGAACTCCATGCCAAGATGGGAAACAAATGGGCACGCATGGCTGCGCATTTACCAGGTCGGACAGATAATGAAATAAAGAACTATTGGAATACTCGAATCAAGAGGCGGCAACGGGCTGGCTTGCCACTTTATCCTCCTGAAGTGGGTTTGCAAGCTATGCAAGAGAGTCAGCATGGCCAAAGCAGTTGCATAATTAGTGGTGGTGATAGAGGACACCATGACTTCCTGGCAAAAAACAGTTATGAGATACACAATACTATATTTGACAGTCTGAAGGACAACCAGGAGGTCTTACCTTGTGCGCCTAAACTTCCTGATATTTCTCCTAGTAGCATTCTGCTGAAAGGTCTTGGTTCTTCTCAAAACTGTAATTTTGTGCCATCAACATTACCTCACCATAAGCGTCTTCGAGAGACAACAATGCCTTTTCTTGGTTCCAGCAGTATGAACAAAAATGGGTTTTATTATCCATTCAACCATATGTGGGATAATACTTCCGATATGATTGCACAATCATTTGGAATGTATTCTCCCCTGGATCATGGTCCCTCCTCACAGAATTCACTGTGTTACAGCCATTCACTTCCAAATGGCAATTCCTCTACTTCTAAGCCAACCTCCGAGGCTATGAAGTTGGAGCTCCCTTCACTCCAATATTTAGAAACTGATTTAGGTGGCTGGGGTACATCTGCACTGCCTCCTTTGCTCAAGTCAGTTGATGTGCTGATTCAGTCTCCTACTCCAACAAGTGCACTGGAATCAGATTGTTCTTCACCACATAATAGTGGTCTGCTGGATGCTTTGCTTCATCAGGCAAAGACTCTTAGCAGTTCAAAGAATCATTATTCTGACAAGAGTTCAAATTCATCTACTGCAACTCCTGCTGATAGAGCTGACAGTTCAACTTTGAACATTTACGGGACAAAATGGGGAGACTACGTTGACCCTGTTTCTCCATTTGGTGCAACATCAATATTGAATGAGTACCCTGCTGTTTGTGCCAATAAAAACTCCTTGGATGAACAACCACCTGGTCAGACCTTTAGCGGCAACATGGTGAAATTAGAATCTGCTGACCAGGTTTGGACCCCTAATAGTGAAAACCAAACCATGTCCATGTTGAATGTTGATGGGCCAGATGTCTTCCTTGCTCCAGATTGGCCTGAGCTTGACCAAGCCATCATGACTGATGCTATTGCAGCCTTTCTCAGTAATGATTTAGCAACTTGTACACCAACTCAAGTATGGGGGTTTGGTTCTGGTGCATGGAATAACATGCCTTCTGTCTGTCAAATGTCTGATCTTCCTTGA 1620 0.4395 MNQTTNAIEDEIFLKGQTGSQLNYESNGGSAEIVALKKGPWTSAEDAILVDYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGSFTAEEERLITELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVGLQAMQESQHGQSSCIISGGDRGHHDFLAKNSYEIHNTIFDSLKDNQEVLPCAPKLPDISPSSILLKGLGSSQNCNFVPSTLPHHKRLRETTMPFLGSSSMNKNGFYYPFNHMWDNTSDMIAQSFGMYSPLDHGPSSQNSLCYSHSLPNGNSSTSKPTSEAMKLELPSLQYLETDLGGWGTSALPPLLKSVDVLIQSPTPTSALESDCSSPHNSGLLDALLHQAKTLSSSKNHYSDKSSNSSTATPADRADSSTLNIYGTKWGDYVDPVSPFGATSILNEYPAVCANKNSLDEQPPGQTFSGNMVKLESADQVWTPNSENQTMSMLNVDGPDVFLAPDWPELDQAIMTDAIAAFLSNDLATCTPTQVWGFGSGAWNNMPSVCQMSDLP 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1747 539 ProSiteProfiles Myb-like domain profile. 36 85 IPR001005 -
Glsi04g1747 539 CDD SANT 40 85 IPR001005 -
Glsi04g1747 539 FunFam MYB-related transcription factor 37 90 - -
Glsi04g1747 539 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 17 496 - -
Glsi04g1747 539 Gene3D - 37 90 - -
Glsi04g1747 539 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Glsi04g1747 539 FunFam Transcription factor GAMYB 93 139 - -
Glsi04g1747 539 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Glsi04g1747 539 SMART sant 90 138 IPR001005 -
Glsi04g1747 539 SMART sant 37 87 IPR001005 -
Glsi04g1747 539 CDD SANT 93 134 IPR001005 -
Glsi04g1747 539 Gene3D - 93 139 - -
Glsi04g1747 539 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 85 IPR017930 -
Glsi04g1747 539 SUPERFAMILY Homeodomain-like 36 132 IPR009057 -
Glsi04g1747 539 MobiDBLite consensus disorder prediction 379 401 - -
Glsi04g1747 539 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Glsi04g1747 539 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1747 Glsi-ChrGlsi04 64003609 64007208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1747 35 532 MYB Transcription Factor Family AT3G11440 44.256 1.56e-120 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi04g1747 Myb_DNA-binding 4.9e-15 CL0123