Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1742 ATGTCGCTAGCGGAGTCGCGATGGTGGACGATGGGGGCTGTGGTTCGAAGAGACGAAGAAGCGAGGGATTGCGCTATCGAGCAGAGCAGAGGTGAAGCTTAGGATATTTTGTTCACTGATACCTTTCTAAACCATTTTCCACCAAATCTTCATCATCTTCCCTTCAATCATATTTTCGCTTCTGTTAAAGGTCTCGATGCCACGGTTGCAGTCTTCAGTTTTGGTTCACACCAAGCTGCAAAGGTGTCAAAAACACAAGTTCTGACTCTGAAAGTTAAACAGAGAAAGACGATGCCGAAGAAGAAGCATAGCGATAGTGACGAAGAAGACATTTTCTATTACCGCTATTCTTCTTCATCTTCTTCAGCACCCTCCGCAAACCCCTCCAGAACCCACAAGAATTCTGGTGGCTCTGGTGGTTTAGCTCCCTCAAAATCAACCCTTTACGTCTCTAACATTGATTTTTCCCTCACCAACTCCGACCTCCACACCCTTTTCTCCACCTTCGGCAAAATCGCCCGAGTCACTGTTCTCAAGGACCGCGTCACTCGCCAGAGCCGCGGCGTCGCTTTTATCCAATTCGTCTCTCGCGACGATGCCCACAAGGCCGCGCAAGAGATGAACCGCAAAATTCTCAACGGCAGGACCTTGACGGCTTCCATCGCGGCCGATAATGGCCGAGCCCCAGAATTTATCAAGAAAAGGGTTTACCGGGATAAGAGTCGGTGTTATGAATGTGGGGAAGCTGGGCATTTGTCTTATGAGTGTCCCAAGAATCAATTGGGGCCCAGGGAGCGTCCGGTTCCGAAGCGTGAAAGACGAGGCGGTGGCGGTGGTGGGAGCGTGTTCCGACGGATAGAGGAGGATGAGTACGGGTCGGACGGTGGGGATCGGTTTGAGGATGATAATTGGGCTTCTGTTGTAGATGATGGGGCGGATGAGAGGTTGCTGACCGGGAACGAGAAGTTTGTGGAGAAGAAGAAGACGAAGAAAGCAAGCTATTTCAGCGATGAGAGCGGCGATGAGGACGATTGA 1035 0.5072 MSLAESRWWTMGAVVRRDEEARDCAIEQSRGEAXDILFTDTFLNHFPPNLHHLPFNHIFASVKGLDATVAVFSFGSHQAAKVSKTQVLTLKVKQRKTMPKKKHSDSDEEDIFYYRYSSSSSSAPSANPSRTHKNSGGSGGLAPSKSTLYVSNIDFSLTNSDLHTLFSTFGKIARVTVLKDRVTRQSRGVAFIQFVSRDDAHKAAQEMNRKILNGRTLTASIAADNGRAPEFIKKRVYRDKSRCYECGEAGHLSYECPKNQLGPRERPVPKRERRGGGGGGSVFRRIEEDEYGSDGGDRFEDDNWASVVDDGADERLLTGNEKFVEKKKTKKASYFSDESGDEDD 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1742 344 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 102 343 IPR044598 GO:0000398|GO:0005689
Glsi04g1742 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 217 IPR000504 GO:0003723
Glsi04g1742 344 MobiDBLite consensus disorder prediction 283 305 - -
Glsi04g1742 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 224 IPR000504 GO:0003723
Glsi04g1742 344 CDD RRM_ZCRB1 145 220 IPR034219 -
Glsi04g1742 344 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 94 230 - -
Glsi04g1742 344 ProSiteProfiles Zinc finger CCHC-type profile. 242 258 IPR001878 GO:0003676|GO:0008270
Glsi04g1742 344 SMART rrm1_1 147 220 IPR000504 GO:0003723
Glsi04g1742 344 MobiDBLite consensus disorder prediction 258 305 - -
Glsi04g1742 344 Gene3D - 233 267 - -
Glsi04g1742 344 SUPERFAMILY RNA-binding domain, RBD 143 229 IPR035979 GO:0003676
Glsi04g1742 344 Gene3D - 76 230 IPR012677 -
Glsi04g1742 344 SMART rrm2_1 147 220 IPR003954 GO:0003676
Glsi04g1742 344 SUPERFAMILY Retrovirus zinc finger-like domains 228 259 IPR036875 GO:0003676|GO:0008270
Glsi04g1742 344 FunFam Zinc finger CCHC-type and RNA-binding motif-containing protein 1 232 276 - -
Glsi04g1742 344 Pfam Zinc knuckle 242 258 IPR001878 GO:0003676|GO:0008270
Glsi04g1742 344 SMART c2hcfinal6 242 258 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1742 Glsi-ChrGlsi04 63734335 63742811 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1742 146 222 Eukaryotic Initiation Factors Gene Family AT4G34110 31.169 4.55e-07 49.7