Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1739 ATGCCTGGCGGTTCAGGCCAAAACTCAGCTCCTCCTTCAGGCTCCGTCTATAAGTCCAGGATTTTAGATGTTAAACCTCTGCGTAGTTTGGAGCCAGTATTCGAAGCGTCAGCTCAAGCTCCTCCCTGTGATGGTACCCATCTCTCTGGGTTTTATCCATTTTTCCCATTTGGTGGACCTCAAGGATCTCAAGCATCGCCTCCAAGGGTTCCCATGCCAACTCCAATACGGTCATTTAGAAGCCCAGAAGTGGCAGCATCACTCCCACCTGAGTTTCCTGGAGCATCCAATGGAGACATTACTTCGTCAATGGAGGGTTTCAGTGATTACGGGTTTGCCGCTGATAACCAGAAACGTGCAGCACCACAAAGATCCAGATCCTCCCAAAAGAGGACTAAGAAAAGTCAAGATTTACGAAATGATTCAAGTTCTTTAGTATGTATTAGCCAAATTCAACGTGAAGATGGTAACCGGGAAGTGGTTAATCTTGTACTCATGAAATTTGATGGACTAAGAAGAAGGCTCAGTCAACTTGAGGATGCCAAGGAATTGACCCCAGGGTTAGTCAAGCGTGCTGATTTGAAAGCTGGCACTCTCTTAATGAGTAAAGGGATTCGAACAAATCAGAGGAGAAGAATAGGAGCAGTGCCCGGGGTTGAGATTGGGGACATTTTCTTTTTCCGACTAGAATTATGTGTTGTGGGGTTACATGCTCAGTCAATGGGTGGAATTGACTACATAACGATCAAGGGTGAGTTTGAGGAGGAACCTGTGGCTTTAAGCATTGTTTCAGCAGGAAAATACGATGACAATGCAGAGGATGATGATATTTTGATTTATAGTGGTCAGGGCAGGGAGCAGGGGGCTGATCAGAAGCTAGAAAGAGGTAATCTTGCTTTGGATAGAAGTTCCCGTTGGAAGAATGAAGTAAGAGTCATCCGAGGCATGAGAGATCCTGTGAATCCAAATTCAAAGGTCTATCTCTATGATGGCCTGTATAAAATTCAGGATTCATGGATGGAAAGGGGGAAATCTGGCGGTGGTGTATTTAAGTACAAGTTCGTGAGAATCCCTGGACAACCCAGTGCCTTTGCTGTTTGGAAAGCTGTTCAAAAGTGGAAGGCTGGCATCACTTCTAGGACTGGACTCATTCTTGCAGACCTCTCCTCAGGGGCTGAGAGTATTCCTGTCTCAGTTGTCAATGATGTTGATGATGAGAAGTTACTTACTTATTTCACTTATTTCCAGTCTCTCCGATGTCAAAAATCCCCAATTGTGTCACAGCCTTCTTATGGCTGCAACTGTCTTAAAGATTGTGTCCCTGGTGATTTGGACTGCTCTTGCATTAGGAGAAATGAAGGTGATTTTCCATATACCGGCAATAACATTCTAGTGAGTCGGAAGCAATTGGTTCATGAATGTGGCCCCACATGTCAATGTTTTCCTAACTGCAAAATTCGAGTATCCCAGACTGGTTTAAAGCACCATATGGAAGTGTTTAAAACGAAGGATAGAGGGTGGGGTCTTCGATCATTGGATCCTATTCGTGCGGGTACATTTATTTGTGAGTATGCAGGAGAAGTTATTGACAGAGCCAAGGTAAGTCAGAAGGAAGGAGATAATGATGAGTATGTTTTTGATACAACCCGTATTTATGATCCATTCAAGTGGAACTATGAACCTACATTACTAGAAGAGGTGAGTTCAAATGATTCTAGTGAGGATTACAACATTCCATTTCCTCTAATTATTAGTGCCAAGAATGTTGGAAACGTGGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTATTCTGGCAGCCAGTTTTATATGAAGAAAACAATCAATCCTTCCTCCATATTGCTTTTTTCGCCATTAGACACATTCCCCCAATGACAGAATTGACATATGATTATGGGATTTCCCATACTGATTATACTGAGGGTGGCGGTTCACTCAAGTGGAGAAAGAAATGTTTATGTGGATCATCAAAATGCCGGGGTTCTTTTGGTTGA 2016 0.432 MPGGSGQNSAPPSGSVYKSRILDVKPLRSLEPVFEASAQAPPCDGTHLSGFYPFFPFGGPQGSQASPPRVPMPTPIRSFRSPEVAASLPPEFPGASNGDITSSMEGFSDYGFAADNQKRAAPQRSRSSQKRTKKSQDLRNDSSSLVCISQIQREDGNREVVNLVLMKFDGLRRRLSQLEDAKELTPGLVKRADLKAGTLLMSKGIRTNQRRRIGAVPGVEIGDIFFFRLELCVVGLHAQSMGGIDYITIKGEFEEEPVALSIVSAGKYDDNAEDDDILIYSGQGREQGADQKLERGNLALDRSSRWKNEVRVIRGMRDPVNPNSKVYLYDGLYKIQDSWMERGKSGGGVFKYKFVRIPGQPSAFAVWKAVQKWKAGITSRTGLILADLSSGAESIPVSVVNDVDDEKLLTYFTYFQSLRCQKSPIVSQPSYGCNCLKDCVPGDLDCSCIRRNEGDFPYTGNNILVSRKQLVHECGPTCQCFPNCKIRVSQTGLKHHMEVFKTKDRGWGLRSLDPIRAGTFICEYAGEVIDRAKVSQKEGDNDEYVFDTTRIYDPFKWNYEPTLLEEVSSNDSSEDYNIPFPLIISAKNVGNVARFMNHSCSPNVFWQPVLYEENNQSFLHIAFFAIRHIPPMTELTYDYGISHTDYTEGGGSLKWRKKCLCGSSKCRGSFG 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1739 671 ProSiteProfiles Post-SET domain profile. 655 671 IPR003616 -
Glsi04g1739 671 Gene3D SET domain 377 670 IPR046341 -
Glsi04g1739 671 MobiDBLite consensus disorder prediction 116 141 - -
Glsi04g1739 671 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 197 375 - -
Glsi04g1739 671 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 113 665 - -
Glsi04g1739 671 SMART G9a_1 209 360 IPR003105 -
Glsi04g1739 671 SUPERFAMILY SET domain 394 668 IPR046341 -
Glsi04g1739 671 SUPERFAMILY PUA domain-like 196 378 IPR015947 -
Glsi04g1739 671 Pfam SAD/SRA domain 213 360 IPR003105 -
Glsi04g1739 671 Pfam SET domain 506 640 IPR001214 GO:0005515
Glsi04g1739 671 SMART preset_2 385 479 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi04g1739 671 ProSiteProfiles YDG domain profile. 214 356 IPR003105 -
Glsi04g1739 671 SMART set_7 495 646 IPR001214 GO:0005515
Glsi04g1739 671 Gene3D - 197 374 IPR036987 -
Glsi04g1739 671 ProSiteProfiles SET domain profile. 495 640 IPR001214 GO:0005515
Glsi04g1739 671 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 72 671 IPR025794 GO:0016571
Glsi04g1739 671 ProSiteProfiles Pre-SET domain profile. 431 492 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi04g1739 671 Pfam Pre-SET motif 389 487 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1739 Glsi-ChrGlsi04 63692408 63694423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1739 74 671 Su(var)3-9 homologs AT5G04940 56.385 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi04g1739 SAD_SRA 1.6e-44 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g0254 14 3362309 3364270 Glsi04g1739 04 63692408 63694423 CCT
Glsi04g1739 04 63692408 63694423 Glsi04g1739 04 63692408 63694423 ECH