Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1727 ATGCAGACCAGCCAGGTTTTAGTTGCACGCGCCTTGATTAGATTAAAATTGACAGAGCGGGAAAGCACAGAAGCACGAAGCCGGCTCCTAATTCATAGAAATAACCCCATAGGAAACCCTAGGCGTAAGAATTTGGGGAACGGGCTTTGTCCACTCGCTCATGTCCCTCGCGTGAGATTTTTCAGTTTCAGATCAACACGCGAAGGAGACCCCGTCTATAATCTTCTTCTTTTATGTAATCACAGAGAGGAAAATGGGTTTCCAAAAGGTGTTTCAGTGAAAAGAAGCAGTGGAAACAGGCATTGGTTAACAGCAAATTTGTCATTCTTATGTACCTGTGTTGGTTTCATTGAAGTATTCTTGAAAATCGTCACACAGAAAACTGTTCTGATCATGGATATAGATCTTAGGTTACCTTCTGGTGAGCATGATAAAGAGGATGAAGAACCGAATACAATTGATAACATATTGGATGGGGAAGAAAAATTGCATAATGGAGATATAGAGGGCAGAAATATGGTTAATGCTGGTGTTGAGGTACATGCTCTAGATGGTGGAGATTTGAATTCACCCACATTGGATATGGTTATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCATGGGGAAGCTTATTCTTTCTACCAAGAATATGCTCGATCAATAGGATTCAACACTGCAATTCAAAATAGTCGCCGATCAAAAACATCAAGAGAATTTATAGATGCAAAGTTTGCTTGTTCCAGATATGGAACAAAACGAGAGTATGACAAGTCATTCAATCGACCACGTGCAAGGCAGAACAAGCAAGACTCTGAAAATTCAACTGGTCGGAGATCTTGTTCAAAGACAGATTGTAAAGCAAGCATGCATGTAAAAAGAAGATCAGATGGAAAATGGGTTATACATAGTTTTGTGAAGGAGCATAATCACGAGCTTTTACCAGCCCAAGCTGTCAGTGAACAAACAAGAAGAATGTATGCTGCAATGGCTAGACAGTTTGCTGAGTACAAAACTGTGGTCAGTCTCAAGAACGAGAAAACTCCATTTGATAAAGGTCGGAATTTGGGCCTGGAGTTGGGGGACGCCAAACTTCTCCTTGATTTTTTTGTACAGATGCAAAATATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAGGATCAACGTTTGAAAAGCCTTTTATGGATTGATGCTAAAAGTAGGCATGACTATGCCAACTTTTGCGATGTAGTGTCTTTTGACACCACCTATGTTAGAAACAAATACAAGATGCCTCTTGCACTTTTTGTCGGAGTGAATCAGCACTATCAATTTATATTGCTTGGGTGTGCCCTGATATCAGATGAAACTGCCACAACTTTGTCTTGGCTAATGCAGACATGGCTGAAAGCAGTTGGAGGTCAAGTTCCGAAAGTGATAATTACTGACCATGACAAGACATTGAAGTCAGTTATTTCAGACGTCTTTCCTGAAGCTCATCACTGTGTGTGTCTGTGGCACATATTAGGGAAGGTATCTGAAAATTTGGCTCATGTAATCAAACGACATGAGAATTTTATGGAAAAATTTGAAAAATGCATCTATAGGTCATGGATGAGTGACGAGTTTGAGAAGAGGTGGTGGAAAATTGTTGATAGGTTTGAACTCCGAGAGGATGAATGCTGGCAGTCATTGTATGAAGATTGTAAGTTATGGGTGCCTACATTCATGAAGGATGTACTTTTAGGTGGTATGTCTACTGTCCAGCGATCTGAAAGTGTAAATTCCTTCTTTGATAAGTATGTTCATAAGAAGACTTCTATACAAGATTTTGTCAATCAGTATGAAGCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCAGATACTGATACTTGGAATAAAGTGGCAACATTGAAAACTCCTTCACCTTTGGAGAAGAGTGTTGCAGGAATTTACACACATGCAGTTTTTAAGAAAATTCAGGTTGAGGTTATCGGTGCAGTTGCTTGTCATCCTAAAGCTGAAAGACAGGATGATGCAAGCATTACTTACAAGGTTCATGATATGGAAAGGAATCAAGACTTCATAGTTGTGTTGAATGAATTAAAATCAACAGTGTATTGTATATGTCGGTTATTTGAATATAGGGGTTATCTTTGTCGACATGCATTGATTGTTCTTCAATATTCTCGCCTTTCCGCAATCCCATCTCAGTATATTTTGAAACGGTGGACAAAAGATGCTAAGTCCAGGCATTTATCTGGAGAAGAACCTGAACATATGCTGGCTAGGGTGCATCGATACAATGGATTATGTCAGCAAGCACTTAAACTGAGTGAAGAGGGATCTCTGTCTCAAGAGAGTTATAGTATTGCATTTCAGGCATTATGTGAAGCATACGCAAATTGTGTGAGTGTCAACAATTCTTGTAAATATCCTACAGAAGCTGGCACATCAGCTGGTCATGGCCAGCTGTCTACTGAAGAAGATACCCAGAGTAGAAATATGGGCAAGACAAACAAAAAGAAGAATCCAGCTAAAAAGAAAAAGATGAACTCTGAGGCTGAAGTGATGACTGTTGGGGCACAAGACAACTTGCAACAAATGGACAAATTCAACACAAGAACAGTAACCATTGATGGTTACTATGGTGCCCAACAGAGTGTGCAGGGAATGTTGAACTTAATGGGACCAACACGTGATAATTACTTTGGGAATCAACAGACTATTCAGGGCCTGGGACAATTAAATTCCATACCACCAAGCCATGATGGTTATTATGGTGCTCATCAGAGCATGCCTGGTTTGGCACAACTGGATTTTTTCCGAGCATCAACAGGTTTTACTTATGGCATTCGGGATGATACTAATGTAAGAGCAGCACAGTTGCATGAGGATCCATCACGACATACATGA 2928 0.3992 MQTSQVLVARALIRLKLTERESTEARSRLLIHRNNPIGNPRRKNLGNGLCPLAHVPRVRFFSFRSTREGDPVYNLLLLCNHREENGFPKGVSVKRSSGNRHWLTANLSFLCTCVGFIEVFLKIVTQKTVLIMDIDLRLPSGEHDKEDEEPNTIDNILDGEEKLHNGDIEGRNMVNAGVEVHALDGGDLNSPTLDMVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSIGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVSLKNEKTPFDKGRNLGLELGDAKLLLDFFVQMQNMNSNFFYAVDLGEDQRLKSLLWIDAKSRHDYANFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFILLGCALISDETATTLSWLMQTWLKAVGGQVPKVIITDHDKTLKSVISDVFPEAHHCVCLWHILGKVSENLAHVIKRHENFMEKFEKCIYRSWMSDEFEKRWWKIVDRFELREDECWQSLYEDCKLWVPTFMKDVLLGGMSTVQRSESVNSFFDKYVHKKTSIQDFVNQYEAILQDRYEEEAKADTDTWNKVATLKTPSPLEKSVAGIYTHAVFKKIQVEVIGAVACHPKAERQDDASITYKVHDMERNQDFIVVLNELKSTVYCICRLFEYRGYLCRHALIVLQYSRLSAIPSQYILKRWTKDAKSRHLSGEEPEHMLARVHRYNGLCQQALKLSEEGSLSQESYSIAFQALCEAYANCVSVNNSCKYPTEAGTSAGHGQLSTEEDTQSRNMGKTNKKKNPAKKKKMNSEAEVMTVGAQDNLQQMDKFNTRTVTIDGYYGAQQSVQGMLNLMGPTRDNYFGNQQTIQGLGQLNSIPPSHDGYYGAHQSMPGLAQLDFFRASTGFTYGIRDDTNVRAAQLHEDPSRHT 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1727 975 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 199 807 IPR031052 GO:0006355
Glsi04g1727 975 MobiDBLite consensus disorder prediction 821 858 - -
Glsi04g1727 975 Pfam SWIM zinc finger 706 733 IPR007527 GO:0008270
Glsi04g1727 975 MobiDBLite consensus disorder prediction 821 837 - -
Glsi04g1727 975 Pfam FAR1 DNA-binding domain 220 322 IPR004330 -
Glsi04g1727 975 MobiDBLite consensus disorder prediction 263 296 - -
Glsi04g1727 975 SMART 26again6 710 737 IPR006564 GO:0008270
Glsi04g1727 975 Pfam MULE transposase domain 419 511 IPR018289 -
Glsi04g1727 975 ProSiteProfiles Zinc finger SWIM-type profile. 699 735 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1727 Glsi-ChrGlsi04 61743264 61751745 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Glsi04g1727 FAR1 4.4e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1727 04 61743264 61751745 Glsi04g1727 04 61743264 61751745 ECH