Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1702 ATGGCTACCAGTCCCACTGCCTCCCTTCTCTTTCCCTCTACAGCCCTTTCTTCTCATTCTCCCTCCACTAAACATGAGTTAATGGTCTCTCCCTTCGCAAAATCACTGGCTCCTTATTCTAAATTCAACGGATGTAGTTTTTCAACCGTTAATTCACGCCAAAATCTCTGCGTTGGTAGACTTTGTGCTTTCAAAAATTCGAATTCACCTACCTTCGTTACGATAGCTTCCGTGAACAGAGAGCCCATGGTTCCCCCTTACAACGTGTTGATAACTGGGTCAAGCAAAGGAATAGGGTATGCACTGGCAAAAGAGTTTCTAAGAGCTGGTGACTATGTCATAATTTGCTCAAGATCAAGTGAAAGGGTGGAATATGCTGTCCAGAGCCTGAGAGCAGAATTCGGAGAGCAGTATGTGTGGGGCACTAAATGTGATGTGAGAGAAGGAGAAGACGTAAAGAATTTAGTTGCATTTGCTGAAGAGAAACTGAAATACATTGATATATGGATTAATAATGCAGGATCAAATGCATATAGCTACAAGCCTCTTGCAGAGGCTTCAGATAAAGATCTTATTGAGGTGGTTAGTACAAATACACTTGGTTTGATGATATGTTGTCGAGAGGCAATAAAGATGATGGTGAACCAGCCTCGTGGAGGTCATATTTTCAATATTGATGGAGCAGGTTCAGATGGAAGACCAACTCCCAGGTTTGCTGCATATGGAGCAACAAAGCGAAGTGTGGTGCATTTAACAAAATCATTACAGGCAGAATTGCAGATGCAGGATGTTAAAAATGTTGCCGTGCATAACCTTTCGCCGGGGATGGTTACAACCGATCTTCTCATGTCAGGTGCCACAACAAAGCAGGCAAAGTTCTTCATAAATGTGTTGGCTGAACCAGCAGAAGTGGTTGCAAAATACCTAGTTCCAAACATTAGATCTATCCTTGCCAATGGATCAATGAAGCCAACTTACATTCGATTCCTCACTGGGTTGAAAGCCTATTCCCAGATTTTTTCACGATTGGCGTTTGGTGCAAGAAGGAACCGGTACCTGCTAGAAGATTGA 1071 0.4286 MATSPTASLLFPSTALSSHSPSTKHELMVSPFAKSLAPYSKFNGCSFSTVNSRQNLCVGRLCAFKNSNSPTFVTIASVNREPMVPPYNVLITGSSKGIGYALAKEFLRAGDYVIICSRSSERVEYAVQSLRAEFGEQYVWGTKCDVREGEDVKNLVAFAEEKLKYIDIWINNAGSNAYSYKPLAEASDKDLIEVVSTNTLGLMICCREAIKMMVNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVAVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPAEVVAKYLVPNIRSILANGSMKPTYIRFLTGLKAYSQIFSRLAFGARRNRYLLED 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1702 356 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 73 354 - -
Glsi04g1702 356 Gene3D - 87 313 - -
Glsi04g1702 356 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 220 228 IPR002347 -
Glsi04g1702 356 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 175 IPR002347 -
Glsi04g1702 356 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 241 260 IPR002347 -
Glsi04g1702 356 CDD SDR_c 89 304 - -
Glsi04g1702 356 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 228 256 IPR020904 GO:0016491
Glsi04g1702 356 PRINTS Glucose/ribitol dehydrogenase family signature 265 282 IPR002347 -
Glsi04g1702 356 PRINTS Glucose/ribitol dehydrogenase family signature 88 105 IPR002347 -
Glsi04g1702 356 PRINTS Glucose/ribitol dehydrogenase family signature 164 175 IPR002347 -
Glsi04g1702 356 PRINTS Glucose/ribitol dehydrogenase family signature 241 260 IPR002347 -
Glsi04g1702 356 PRINTS Glucose/ribitol dehydrogenase family signature 214 230 IPR002347 -
Glsi04g1702 356 FunFam Chlorophyll(Ide) b reductase NOL, chloroplastic 84 329 - -
Glsi04g1702 356 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 88 308 IPR036291 -
Glsi04g1702 356 Pfam short chain dehydrogenase 89 284 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1702 Glsi-ChrGlsi04 60536651 60550156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1702 89 281 Acyl Lipid Metabolism Gene Families AT1G24360 29.798 9.48e-16 75.5