Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1698 ATGAATGCTCCGATAATTGGTTCGATTTCTTCTGCTTTCTCTCTCTCTCTAGTTGGGGATTTTCCCGAAGTGATAGAGGAGTATTTGGAGCATGGGTGCATGAAGTGTATTGCCTTCAATCGTCGCGGTACCCTTCTTGCTGCTGGGTGCAATGATGGAAGCTGTGTTATTTGGGACTTTGAAACCAGAGGCATTGCTAAGGAGCTTCGGGATAATGAATGTTCTTCTCCTATAACTAGTATCTGTTGGTCAAGCTATGGCCATCGAATTCTTGTATCTGCTGCTGATAAATCATTAATATTGTGGGATGTTATGAGTGGTAAGAGGATAACTCGAATAGTTTTACAACAAACCCCTATTCAAGCTCGTCTTCATCCAGGTTCCTCTACCCCATCTGTCTGCTTGGCATGCCCTCTCTCATGTGCTCCAATGATTGTCGACTTGAATACCGGAAACACAACTTCCCTTAAAGTTATAGACATATGCAGTGTTGGACCCACCCCTCCATCACGCAGCAAGTGCTCCGATGGAATGACCCCCTACACTCCAACTGCTGCGTGCTTTAATAAGTATGGAAATCTGGTTTATGTGGGCAATTCAAAAGGAGAAATTCTAATATTTGATTACAAAGATTGTGAAGCACGTGCCATGGTTCCTATCTCTGGTGGTTCTGTAGTCAAGAACATAGTTTTTAGTAGGAATGGGCAGTATTTGCTCACAAATTCGAATGATCGGATAATCAGGATATATGAAAACCTTCTGCCTTTGAAAGATGAAGTTAGAGCCCTTGATAACCTAAGTGAGAGCCTCAATGATCTTAATGGTGCTGAGAAGTTGAAGGCTGTTGGATCAAAATGTTTATCTCTATTCCGGGAGTTTCAAGATTCCATCACAAAGATGCACTGGAAAGCACCCTGTTTTAGTGGCGATGGTGAGTGGGTAGTTGGTGGTTCTGCCAGCAAAGGAGAGCACAAGATTTACATATGGGATAGAGCTGGGCATCTTGTAAAAATCCTTGAAGGACCTAAAGAAGCCCTTATTGATTTGGCCTGGCATCCTATTCATCCTATTGTTGTATCCGTTTCCCTGGCTGGCTTAGTTTATATCTGGGCTAAAGATTACACTGAGAACTGGAGTGCATTTGCTCCTGATTTCAAAGAGCTAGAGGAAAATGAGGAGTATGTAGAGCGAGAAGATGAATTTGATCTGATTCCTGAGGCTGAGAAGGTGAAAGGATCCAATGTTAATGAGGATGAGGAAGTTGATATTGAAACAGTGGAGAAAGATGCTGCTTTCAGTGATTCTGATATGTCTCAAGAAGAGTTATGTTTCTTGCCAGCAACACCTAGTCGTGATGCTCCTGAACAGATGGACAAATGTGTAGAAAGTTCTTCAAAGCAGATGGACAGTAATAATTCTGGATCCCCTCTTTCAGAAGAGGCTGGACCTAATGGACATCCGATGAATCGTGAGTCAAGTCCACTTGAAGATGATGCAGGGGGAACGCGGATGAAAAGAAAGCGGAAACCTTCCGAGAAGGCATTGGAGTTGCAGGCAGAAAAAGTCAAGAAACCCTTAAAAAATAGTAAATTGTCAAAATCTAAAATCAAATCTTTGGTTGATCAGGATAATGGTAACGGTTTATATGGTGATGAGACTTCTGATGAATAA 1671 0.4219 MNAPIIGSISSAFSLSLVGDFPEVIEEYLEHGCMKCIAFNRRGTLLAAGCNDGSCVIWDFETRGIAKELRDNECSSPITSICWSSYGHRILVSAADKSLILWDVMSGKRITRIVLQQTPIQARLHPGSSTPSVCLACPLSCAPMIVDLNTGNTTSLKVIDICSVGPTPPSRSKCSDGMTPYTPTAACFNKYGNLVYVGNSKGEILIFDYKDCEARAMVPISGGSVVKNIVFSRNGQYLLTNSNDRIIRIYENLLPLKDEVRALDNLSESLNDLNGAEKLKAVGSKCLSLFREFQDSITKMHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPIHPIVVSVSLAGLVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPEAEKVKGSNVNEDEEVDIETVEKDAAFSDSDMSQEELCFLPATPSRDAPEQMDKCVESSSKQMDSNNSGSPLSEEAGPNGHPMNRESSPLEDDAGGTRMKRKRKPSEKALELQAEKVKKPLKNSKLSKSKIKSLVDQDNGNGLYGDETSDE 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1698 556 SUPERFAMILY WD40 repeat-like 32 370 IPR036322 GO:0005515
Glsi04g1698 556 PANTHER RETINOBLASTOMA-BINDING PROTEIN 5 18 516 IPR037850 GO:0048188
Glsi04g1698 556 SMART WD40_4 213 251 IPR001680 GO:0005515
Glsi04g1698 556 SMART WD40_4 332 371 IPR001680 GO:0005515
Glsi04g1698 556 SMART WD40_4 21 59 IPR001680 GO:0005515
Glsi04g1698 556 SMART WD40_4 165 208 IPR001680 GO:0005515
Glsi04g1698 556 SMART WD40_4 62 103 IPR001680 GO:0005515
Glsi04g1698 556 SMART WD40_4 283 330 IPR001680 GO:0005515
Glsi04g1698 556 FunFam Compass component swd1 170 430 - -
Glsi04g1698 556 Pfam WD domain, G-beta repeat 76 103 IPR001680 GO:0005515
Glsi04g1698 556 Pfam WD domain, G-beta repeat 287 330 IPR001680 GO:0005515
Glsi04g1698 556 Pfam WD domain, G-beta repeat 30 59 IPR001680 GO:0005515
Glsi04g1698 556 Gene3D - 145 392 IPR015943 GO:0005515
Glsi04g1698 556 FunFam Retinoblastoma-binding-like protein E 26 128 - -
Glsi04g1698 556 MobiDBLite consensus disorder prediction 491 527 - -
Glsi04g1698 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 34 68 IPR001680 GO:0005515
Glsi04g1698 556 MobiDBLite consensus disorder prediction 532 556 - -
Glsi04g1698 556 Gene3D - 23 137 IPR015943 GO:0005515
Glsi04g1698 556 MobiDBLite consensus disorder prediction 460 479 - -
Glsi04g1698 556 Coils Coil 256 276 - -
Glsi04g1698 556 ProSitePatterns Trp-Asp (WD) repeats signature. 46 60 IPR019775 -
Glsi04g1698 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 75 112 IPR001680 GO:0005515
Glsi04g1698 556 MobiDBLite consensus disorder prediction 446 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1698 Glsi-ChrGlsi04 60441401 60446380 Dispersed/Wgd