Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1680 ATGAAGATCACCCACTTGCTGGTGTTTGTTCTTGGACTAACTTCCGCCACATTTTTGGTGATTCTCATGCTCTTTGTCCACTTTTATCGCAAAAGAATGACAAACTATGACAGTGAAGACATAGAAAGATCAGAACACAAACATGAAGATACAGTGCAGAAAGAGGACTTGATCATCTTCCAAGGTGGTGAGGATCTTACAATATGTGACGTATTGGATGCTCCAGGGGAAGTGATTGGAAAATCCAATTATGGGACACTGTACAAGGCCTTGTTGCAGCGAAGCAACTCAGTGAAGCTGCTGAGGTTTTTGAAACCAGTTTGCACGTCAAGAGCTGAAGAATTGGATGATATGATTCAGTTGCTTGGAGGGATAAGGCATCCCAATTTGGTACCTCTTCTGGGATTTTACACAGGGCCGAGGGGTGAGAAGCTTCTTGTTCATCCTTTTTATACGAGTAGGAATCTGTCTCAATTCATAAGAGGACCAAAAGGGATATCTGTGTTAAACATTAATGATGATGATTCAAACAGTCTGTCTATGGAAATGGCAAGTATTAGCTGGAGTACCGTATATAGAATATCCTTTGGCATAACCAAAGGTTTAGAGCATCTTCACACGGGAATGCAGAAGCCGAATATCCATGGGAATTTTAAGTCTAAAAATATCCTTCTGGATTGCAATTACCAGCCATTCATCTCAGATTATGGGCTGCATCTTCTGTTGAATCCTACTGCTGCCCAAGAAATGCTCGAAACTTCAGGTGCTCAGGGTTATAAGGCACCTGAGCTGCTCAAAATGAAGGATGCTAGTGAAAAGACCGATATATATAGCCTTGGTGTAATCTTGCTGGGATTGCTTTCAGGGAAGGAACCTATCAATGAGCACCCTACCCCTGATGAGGATTTTTATTTGCCAAATTTCATGCAAAATGCCGTCATTGGACATAGGATTGCTGATTTATACCATCCAGCCATTCTTCTCTGCAACAGCAGAAATGATGAAACCCCAATTACAGAAGAATGCATACTCAAATTCTTTCAACTTGCTATGGCTTGCTGTTCCCCTTCACCTTCACTTAGACCTAACATAAAACAAGTCCTTTGGAAGCTTGAAGAAATTGTAAAATAG 1131 0.412 MKITHLLVFVLGLTSATFLVILMLFVHFYRKRMTNYDSEDIERSEHKHEDTVQKEDLIIFQGGEDLTICDVLDAPGEVIGKSNYGTLYKALLQRSNSVKLLRFLKPVCTSRAEELDDMIQLLGGIRHPNLVPLLGFYTGPRGEKLLVHPFYTSRNLSQFIRGPKGISVLNINDDDSNSLSMEMASISWSTVYRISFGITKGLEHLHTGMQKPNIHGNFKSKNILLDCNYQPFISDYGLHLLLNPTAAQEMLETSGAQGYKAPELLKMKDASEKTDIYSLGVILLGLLSGKEPINEHPTPDEDFYLPNFMQNAVIGHRIADLYHPAILLCNSRNDETPITEECILKFFQLAMACCSPSPSLRPNIKQVLWKLEEIVK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1680 376 Gene3D Phosphorylase Kinase; domain 1 74 150 - -
Glsi04g1680 376 ProSiteProfiles Protein kinase domain profile. 73 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1680 376 Gene3D Transferase(Phosphotransferase) domain 1 175 376 - -
Glsi04g1680 376 Pfam Protein tyrosine and serine/threonine kinase 76 370 IPR001245 GO:0004672|GO:0006468
Glsi04g1680 376 SUPERFAMILY Protein kinase-like (PK-like) 76 373 IPR011009 -
Glsi04g1680 376 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 184 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1680 Glsi-ChrGlsi04 59391909 59393728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1680 36 376 Carbohydrate Esterase AT5G61570 54.203 1.03e-125 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi04g1680 PK_Tyr_Ser-Thr 1.6e-24 CL0016