Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1678 ATGGCGGTATCTCTTCCCTTCCACGCCGGTTTAAGGGACTTCATGGTTTCAACGTTCAACAGAGCTGCTTTTGATTGAGAATTTACTCTCTCCTACAAGGGAATTTTGATGGATACAATCCAGGAAGAGGCAGATGAAAAAATAATAATTCAGCGATCCTCATTTTCAGTTGTTTATGTAGCTATCAAGGGTAACAAGAAAAGCAAATATGTTTTACAGTGGGCACTTAATAAGTTTGTTCCTGAGGGAAGGATTATCTTCAAGCTGATACATGTCCACGCTGGCATAAAAGGAGTTCCAACGCCAATGGGAAATGTCATTCCTATTTCACAAGTTCGTAATGATGTAGCAGCTGCTTTCAGAAAGGAAGTGGAGTGGCAGATAAGTCAAATGCTTCTACCTTATGAGAAAATGTGTGATAAGAGAAAGGTGCAAGTAGATATTGTGGTGATTGAATCTGGTGATGTGGCAACTGCTATAGCGGAAGAAGTTGCGAAGGTTGCTGCAACCAAACTTGTCATAGGAGCTTCATCTCGTAGCATATTTTCCAGCAAGCTTAAGGGTATGACTGCAAAAATCTCAGCATGCACTCCAAGATTTTGTACTGTTTATGCTATTTCCAAAGGAAAATTGTCATCCATACGGCCATCAGACATACAGATTGCTGAGAGCTTTATAGATGACAGTAGCGAAATCAGTTGTTCCACCACCAGCTCATCAAACTACACTTCCACCTCTCAGACAGACTCTGGCTCAGTTGCTTCATATGCTCCTTTAAATTCCACTTCTATAGCAGCACAGCGGTTTCAAGCTCTTTCAGCTATTAATCAGACCCTTCTAAGCACAAATCCTAGTTTAATTGAATCTAACCATTCTAGATGCCAGTCTCTAGACCTTGGGACAGAGAATAATGCCACAAGTTCATCTGCCAGGTATTCAGATACTGGCTGTGGTTTGAGTCGGGCCTCTAGCTGCAGAAGCATTAAATCAGAAAATGTGATTTATGATCAAAGTTTCACCATGGATGTCCCATCAGCAATGGAATTTCCTTCACCTATTAGGCAGGCAAATATTAACCTAGAGCTGGAGAAGTTGAGGATTGAACTTAGACATGCCCAAGGAATGCATGCAATAGCTCAAAGTGAGAACATTGATGCAGCACGAAAGCTGAATGATTTAAGTAAAAGGCGATCAGAGGAATTCATGAAACTCAAGGACATTATTGCTAAGGAAGAGTTGGCAAAAGAATCAGTAAGGCATGAGAGGGAGAAAAATGAAGCTGCAGAAAAAGAAGCTGCCTATTTGAAAGATTATGCTGAAAGAGAAGCCACAGAAAGAAGAGAAGCTGAGATTAAAGCTGTTCATTCTGCAAAAGAGAAAGAAAAGCTCGAGTATGCTCTTACTGGTTCCACATCCCACTACCGTAATTTTGCATGGGACGAAATAGTGTCTGCCACCTCCTTTTTCTCTGAAGAACTGAGAATTGGAATGGGAGCTCATGGTACTGTGTACAAGTGCAATTTGCATCATACTGATGTGGCTGTTAAAATACTCCACTGTAAAGAGAGCCACAAAAGCAAGCAATTCCAGCAGGAGGTAGAAATCTTGAGCAGAATTCGTCATCCAAATTTGCTGCTCCTTCTTGGTGCATGCCCTGATAATGGATGTCTTGTATATGAATATATGGAGAATGGTAGCTTGGAGGACAGGTTACTCCGGAAAGACAGTACCACCCCAATTCCTTGGTTTGAGAGGTATCGAATTGCATGGGAAATAGCCTCAGCTCTTGCCTTTCTTCACTGCTCAAAGCCAAAACCTATTATACACCGTGATTTGAAACCAGCAAATATTTTGCTTGATAGTAACCTAGTGAGCAAGATTGGTGATATTGGCCTTTCTACGATGCTCCTTTCAGATAATTCATCTACCATGTATGAAGACACAGCACCTGTTGGGACACTCTGCTACATAGATCCTGAGTATCAGAGGACTGGGTTAATATCTCCAAAATCTGATGTTTATGCTTTTGGGATGGTGATTTTACAGTTATTGACAGCAAAACCAGCTATAGCTCTTACTCATGTGGCAGAAACAGCAATTGACAATGGAAATTTACCAGATATATTGGACCCAGAGGCAGGGAGTTGGCCAGCTCAGGAAACACTGGACCTGGCTCGATTAGGCCTTAGCTGTGCAGAACTTCGGCGGAGAGACCGACCTGATTTAGAAGACCATGTGCTTCCTGCACTAGAAAGATTGAAAGAAGTTGCTGATAGGGCCCGGGGTTCCAGTTTGAATGTTAAATCCAAACCTCCTAATCATTTTATCTGCCCAATACTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCGGATGGTTATACATATGATAGAAAAGCAATCGAGACGTGGTTTCAAGAGAATGACAAATCACCAATGACAAATATGGCACTGCCTCATAAGAATTTAATTCCTAATTACACAATTTTAGCGGCAATTATGGAGTGGAAGTCCGGAGGAAAATGA 2526 0.4165 MAVSLPFHAGLRDFMVSTFNRAAFDXEFTLSYKGILMDTIQEEADEKIIIQRSSFSVVYVAIKGNKKSKYVLQWALNKFVPEGRIIFKLIHVHAGIKGVPTPMGNVIPISQVRNDVAAAFRKEVEWQISQMLLPYEKMCDKRKVQVDIVVIESGDVATAIAEEVAKVAATKLVIGASSRSIFSSKLKGMTAKISACTPRFCTVYAISKGKLSSIRPSDIQIAESFIDDSSEISCSTTSSSNYTSTSQTDSGSVASYAPLNSTSIAAQRFQALSAINQTLLSTNPSLIESNHSRCQSLDLGTENNATSSSARYSDTGCGLSRASSCRSIKSENVIYDQSFTMDVPSAMEFPSPIRQANINLELEKLRIELRHAQGMHAIAQSENIDAARKLNDLSKRRSEEFMKLKDIIAKEELAKESVRHEREKNEAAEKEAAYLKDYAEREATERREAEIKAVHSAKEKEKLEYALTGSTSHYRNFAWDEIVSATSFFSEELRIGMGAHGTVYKCNLHHTDVAVKILHCKESHKSKQFQQEVEILSRIRHPNLLLLLGACPDNGCLVYEYMENGSLEDRLLRKDSTTPIPWFERYRIAWEIASALAFLHCSKPKPIIHRDLKPANILLDSNLVSKIGDIGLSTMLLSDNSSTMYEDTAPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALTHVAETAIDNGNLPDILDPEAGSWPAQETLDLARLGLSCAELRRRDRPDLEDHVLPALERLKEVADRARGSSLNVKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIETWFQENDKSPMTNMALPHKNLIPNYTILAAIMEWKSGGK 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1678 841 Coils Coil 362 382 - -
Glsi04g1678 841 CDD RING-Ubox_WDSUB1-like 772 826 - -
Glsi04g1678 841 SUPERFAMILY Protein kinase-like (PK-like) 470 744 IPR011009 -
Glsi04g1678 841 ProSiteProfiles Protein kinase domain profile. 489 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1678 841 SUPERFAMILY RING/U-box 768 837 - -
Glsi04g1678 841 PANTHER OS02G0152300 PROTEIN 57 834 - -
Glsi04g1678 841 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 58 188 - -
Glsi04g1678 841 CDD STKc_IRAK 495 753 - -
Glsi04g1678 841 Pfam Protein kinase domain 491 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1678 841 CDD STK_N 57 209 - -
Glsi04g1678 841 Gene3D Phosphorylase Kinase; domain 1 456 561 - -
Glsi04g1678 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Glsi04g1678 841 Gene3D Transferase(Phosphotransferase) domain 1 562 769 - -
Glsi04g1678 841 Coils Coil 410 431 - -
Glsi04g1678 841 ProSitePatterns Protein kinases ATP-binding region signature. 495 516 IPR017441 GO:0005524
Glsi04g1678 841 Pfam U-box domain 772 837 IPR003613 GO:0004842|GO:0016567
Glsi04g1678 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 770 840 IPR013083 -
Glsi04g1678 841 SMART Ubox_2 774 836 IPR003613 GO:0004842|GO:0016567
Glsi04g1678 841 ProSiteProfiles U-box domain profile. 770 841 IPR003613 GO:0004842|GO:0016567
Glsi04g1678 841 SMART serkin_6 489 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1678 841 Gene3D HUPs 43 191 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1678 Glsi-ChrGlsi04 59042223 59083999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1678 57 838 U-box Gene Family AT4G25160 52.461 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Glsi04g1678 Pkinase 3.3e-40 CL0016