Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1668 ATGGAGGTCAATTTGGGACTAGTTGCAGGCTCTCATAACAGCAACGAATTCATTATCATCAACCAAGATGGAAATTTTCCTGTGCAGCAGTTATGTGGGAAAGTATGCCAAATATGTGGAGATGAGATTAGGCTAAATGCAGATGGTGAACTCTTTGTGGCCTGCAATGAGTGTGCCTTTCCTGTTTGTAGAAACTGCTACGAGTATGAGAGAACGGAAGGAAGCCAAGTGTGCCCTCAATGCAAAACCAGATATAAACGTCTCAAAGGAAGTGCTAGAGTTGAGGGAGATGAGGAAGAGGATGACAGTGATGACTTGGAGAATGAATTCGATCTTGTTGGAGGAAGTAAACAGGATATGCAGCTGGCTATTGCTACCAAGGTATTGTTTCAATATTATGTTGATGATATACGGCAAGAGCATCATGCTATCGTCCCCTCAACCATGGGCAATCAGATAATCGCATTGAAAATGCAAGCTAGACCTATGGACCCTTCTAAGGACTTGGCAGCTTATGGCTATGGAAGTGTTGCATGGAAGGAGAGGATGGAGATATGGAAGCAAAAACAAGAGAAACTTCGTAAAATGAAGAAAGAAAATAGCAGTGAAGATCAGGAAAATGTTGAAGATGACACAGAACTGCCACTAATGGATGAGGGAAGACAGCCATTATCAAGAAAGTTGCCTATTCCATCCAGCCAAATCAACCCTTACCGCATGATAATAATAATTCGACTTCTAATTTTTGGGTTCTTCTTCCATTATCGAGTAATGCATCCAGTAGACAATGCCTATGCTTTGTGGCTTGTAGCTATAATATGTGAGCTTTGGTTCACGCTTTCATGGATTCTTGATCAGTTCCCAAAGTGGCTCCCTGTAAGGAGGGAAACTTATCTGGATAGGCTATCATTAAGGTATGAGAAAGATGGCCAGCCTTCACAGCTTTCTCCGGTTGATATATTTGTGACTACATTTGACCCGCTGAAAGAACCTCCTCTGGTGACTGCAAACACAGTTCTTTCCATTCTTGCAGTGGATTACCCTTCTGAAAAGATCTCATGCTATGTTTCTGATGATGGGGCTGCTATGTTAACATTTGAGGCCTTATCTGAAACTTCTGAATTTGCAAGGAAATGGGTTCCTTTCTGTAAGAAATTCAATATTGAGCCTCGGGCTCCTGAGTGGTACTTCGCAGAGAAGATAAATTACCTGAAAGATAAGGTGCACCCAGCTTATGTGAAGGAGAGAAGAGCAATGAAGAGAGAGTATGAAGAATTTAGAGTTCGAATTAATTCTTTGGTTGCAAGGGCTCGAAAGGCCCCTGAAGAAGGATGGACAATGCAGGATGGAACAGCATGGCCTGGAAATAATGTTTGTGACCACCCTGGAATGATCCAGGTTTTTCTTGGCCAATATGGAAGACATGACATGGATGGAAATAAATTACCACGTCTGGTATATGTTTCTAGGGAAAAGAGACCTAAATTCAAACACCATAAAAAAGCTGGAGCACTGAATGCTTTGGTTAAAGTGTCTGCTGTAGTTTCCAATGCACCTTATCTGTTAAACTTGGACTATGATCATTATGTCAATAATAGCAAGGCTATTAGAGAAGCAATGTGTTTCATGATGGACCCATTACTAGGAAAAAGGGTATGCTATGTTCAGTTCTCTCAGAGATTTGATGGCATTGACAACAATGAAAGATATGGCAATCAAAGTACTGCATTCCTTGATATTAACATGAAAGGCTTGGATGGTATCCAAGGACCTTTATATGTTGGGACAGGATGTGTCTTTAAAAGACAAACACTATATGGTTATGATGCACCAAGAAAAAAGAAGCCACCAACCAAAACCTGCAATTGCTGGCCAAAGTGGTGTTGCTGTAAATGTTGCTGCTTAGGGAAGAAGAAGTTGAAGAATCCCAAGTTTCACATAAAGGAGAGCAATCACAGAAAAGTACATGCGGAGGCATCTGTGGCAGAGCGTGCTACAAACTGTATTGAACAGGGCACCAAAGGAGTTGAAGGCCAAGTTTTAGCTTCAAACCCTGACCCAAAGTTGGGAAAGAAATTTGGACAATCTCCTGTGTTCATTGCATCTACTCTGCTAGAGGAGGGTGAGACTGTGAAAGATGGTAACCTTGTATCTCTACTCAAAGAAGCCATTCATGTAATTAGCTGTGGCTATGAGGAGAAGACAGAATGGGGAAAAGAGGTTGGGTGGATCTACGGTTCAACTACAGAGGATATATTGACAGGATTTAAAATGCACTGCCATGGATGGAGATCTATCTATTGCATCCCTGAAAGACCTGCTTTCAAAGTTTCTGCCCCAAGAAACCTTTCTGATGGTCTGCACCAAGTCTTTAGATGGGCTCTTGGATCCACTGAGATATTCTTGAGCAGACACTGCCCTCTTTGGTATGGATACGGAGGGGGATTGAAGTGGTTAGAACGTCTTTCCTACGTAAATGCTACATTCTATCCATGGACATCAATTCCTTTGGTGGCATATTGTACTCTGCCTGCAGTCTGCTTGCTCACAGGGAAATCTATTATTCCTGAGCTTAGCAATTTAGCTGGCATGTGGTTCCTGTCACTTTTTGTTTGCATCTTTGGAACAAGTATGCTAGAGATGAGATGGAGTGGAGTTACAATTGATGAATGGTGGAGAAATGAGCAATTCTGGGTGATAGGAGGTGTTTCAGCACATTTATTTGCTGTATTCCTCGGGCTCTTTAAAGTCTTAGCAGGTGTAGATGCAAAACTCATTGTGAAATCAAACGCAGGAGATGACAAGTTGTCCAAGACATTTGCATTGAAGTGGACCACTTTGCTAATCATACCAACAACGTTGCTAGTTTTGAACATGATTGCCATTGTTGCAGGAGTCTCATATGCAATAAACAATGGTTTTGACTCGTGGGGGCCTCTATTAGGCAAACTCTTCTTCTCATTCTGGGTAATTGTTCACTTATACCCTTTCCTCAAGGCTATGCTGGGTAGGCAGAACAGGACTCCCACCATCATTCTTGTCTGGTCAATTTTGCTTTCTTCTTTCTTCTCTGTTTTGTGGGTGAAAATAGATCCATTTTTGCCCAAATCAAATGGTCCAGTTCTAGAGGAATGTGGATTGGATTGTGATTAG 3153 0.418 MEVNLGLVAGSHNSNEFIIINQDGNFPVQQLCGKVCQICGDEIRLNADGELFVACNECAFPVCRNCYEYERTEGSQVCPQCKTRYKRLKGSARVEGDEEEDDSDDLENEFDLVGGSKQDMQLAIATKVLFQYYVDDIRQEHHAIVPSTMGNQIIALKMQARPMDPSKDLAAYGYGSVAWKERMEIWKQKQEKLRKMKKENSSEDQENVEDDTELPLMDEGRQPLSRKLPIPSSQINPYRMIIIIRLLIFGFFFHYRVMHPVDNAYALWLVAIICELWFTLSWILDQFPKWLPVRRETYLDRLSLRYEKDGQPSQLSPVDIFVTTFDPLKEPPLVTANTVLSILAVDYPSEKISCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFAEKINYLKDKVHPAYVKERRAMKREYEEFRVRINSLVARARKAPEEGWTMQDGTAWPGNNVCDHPGMIQVFLGQYGRHDMDGNKLPRLVYVSREKRPKFKHHKKAGALNALVKVSAVVSNAPYLLNLDYDHYVNNSKAIREAMCFMMDPLLGKRVCYVQFSQRFDGIDNNERYGNQSTAFLDINMKGLDGIQGPLYVGTGCVFKRQTLYGYDAPRKKKPPTKTCNCWPKWCCCKCCCLGKKKLKNPKFHIKESNHRKVHAEASVAERATNCIEQGTKGVEGQVLASNPDPKLGKKFGQSPVFIASTLLEEGETVKDGNLVSLLKEAIHVISCGYEEKTEWGKEVGWIYGSTTEDILTGFKMHCHGWRSIYCIPERPAFKVSAPRNLSDGLHQVFRWALGSTEIFLSRHCPLWYGYGGGLKWLERLSYVNATFYPWTSIPLVAYCTLPAVCLLTGKSIIPELSNLAGMWFLSLFVCIFGTSMLEMRWSGVTIDEWWRNEQFWVIGGVSAHLFAVFLGLFKVLAGVDAKLIVKSNAGDDKLSKTFALKWTTLLIIPTTLLVLNMIAIVAGVSYAINNGFDSWGPLLGKLFFSFWVIVHLYPFLKAMLGRQNRTPTIILVWSILLSSFFSVLWVKIDPFLPKSNGPVLEECGLDCD 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1668 1050 CDD mRING-HC-C4C4_CesA 34 84 - -
Glsi04g1668 1050 SUPERFAMILY Nucleotide-diphospho-sugar transferases 318 810 IPR029044 -
Glsi04g1668 1050 MobiDBLite consensus disorder prediction 196 215 - -
Glsi04g1668 1050 Pfam Zinc-binding RING-finger 27 102 IPR027934 -
Glsi04g1668 1050 ProSiteProfiles Zinc finger RING-type profile. 36 82 IPR001841 -
Glsi04g1668 1050 Pfam Cellulose synthase 318 1041 IPR005150 GO:0016020|GO:0016760|GO:0030244
Glsi04g1668 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 109 IPR013083 -
Glsi04g1668 1050 FunFam Cellulose synthase 19 109 - -
Glsi04g1668 1050 SUPERFAMILY RING/U-box 23 104 - -
Glsi04g1668 1050 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 222 1016 - -
Glsi04g1668 1050 Coils Coil 416 436 - -
Glsi04g1668 1050 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 467 612 IPR029044 -
Glsi04g1668 1050 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 306 413 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1668 Glsi-ChrGlsi04 57977982 57985651 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1668 7 1049 Glycosyltransferase AT2G21770 63.477 0.0 1434