Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1665 ATGGCTATGAGGATTATAGTGATTTCAGCAGTTTCTACAGTGTTAAGCTTTGTGTGTCTACAATTTTGCACAGAGTTTTCATTAGATAAACTTAAATCAGATGGACTAAGTGGCAGGAATTTTATTCACTTGGATAATGCCAGCCATGTCAGTGAGGTCCTTCTGGGATCTTATACCACAATAGGGCTACTTGCAAATTTTATGATAAATATATTCATCTTTCTCAATCTTTGTCTCAAGACTATATTCTTTAAAGAGCTGTATCCTTCTGAAACATGGAAACTGGTTGAGCGTCTCATAAATTATGTCATTTACAAGGGGACATTTCTACCGTTGATTGTGCCTCCAACAGTATTTGAGGCTGGTTTATGGTCCGCCTGGTTGATTGTGTTATGTTCTTTAAAGATGTTTCAAGCTTTGGTCAGAGATCGTTTGGAGCGGCTGAATGCATCACCATCTGCTACACCCTGGACATATTTTCGTGTATATTCGGCATTGTTATTGGTTTTGTTGGTTGATGTTTTCTGGATATGGTTATGTCTGGTGATATATACAGCACGTAGATCCTCTTTGTTTCTGTTACTATTCTTTGAGCCTTTTAGTATTGCTTTTGAGACCCTACAGGCCATCTTGGTACATGGATTTCAGTTGCTTGATATATGGCTCTATCATTCAGCATCAAACAGCACTTGGTGCCGAGGATCCAAACTGTTTGACACCTTAGGAGCTGGATCGTTCTTGGAATGGAAGGGCATGTTAATTCGGAATTTGGGGTTTTTCCTGGACATGGCAACTTTTGTTATGGCACTTGGCCATTACTTGCATATTTGGTGGCTTCATGGCATGGCATTCCATCTTGTAGATGCAGTGCTATTTTTTAACATACGTGCATTGCTTGGTGCCATTATAAATCGCATAAAAGGCTTTATCAGGTTACAAATAGCTCTAGGTGCACTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTACAAGCATATGATGATGAATGCGCTATTTGTAGGGAACCTATGGCAAAGGCTAAAAAGCTAAACTGCAATCACCTCTTTCATCTTGCATGTTTGAGATCATGGTTGGATCAAGGCCTGAGTGAGATTTATACTTGTCCAACATGTCGAAAGCCACTTTTTGTTGGCCGGCCTGAAATTGATGCAAATTCTAATCCTGAGGAAATATCAAGTGATGAGCAGCTTGCACGTCAAATTAGTGTACGACTTGATTGGCCAAACACTCCTAGACATACCATGCCTGCAGGATTATATCGTAATCAAACACCAAACTCTCTGGAAGGCATTCCTTGGAGGGGTGCAGGACTGGACTCTGGTTGGTTGCATTCTTGGCCAAGTCAAGGTGTTGATGGGGCTGGTCCGTCTACTGCAATCAGGTCAGTTGGATTAGGGAGAGTTCAACTGATGATGAGGCATCTTGCATCAGTTGGAGAAACCTATGCGCACACTGCCCTTGAAGATGCTGCTTGGAGCCTTTGGCCTATTAATCCTTCTCAGGCTTCTGCTAGTGGTTCACCCATCCCTTCTCCTACTGGCAGATCGCCTGGAGGCACTGGTAGTTTACATATGAGGACTCCCTCACGCACTGCAAATGATGATTTAGATAATATACTTGCCATGGCTGAGACAGTTCGGGAGGTTCTACCTCACATACCAGATGATGTAATTTTCCAGGACTTGCAGCGAACAAATTCTGTCACAGTTACAGTGAATAATCTTCTTCAAATGTGA 1761 0.4219 MAMRIIVISAVSTVLSFVCLQFCTEFSLDKLKSDGLSGRNFIHLDNASHVSEVLLGSYTTIGLLANFMINIFIFLNLCLKTIFFKELYPSETWKLVERLINYVIYKGTFLPLIVPPTVFEAGLWSAWLIVLCSLKMFQALVRDRLERLNASPSATPWTYFRVYSALLLVLLVDVFWIWLCLVIYTARRSSLFLLLFFEPFSIAFETLQAILVHGFQLLDIWLYHSASNSTWCRGSKLFDTLGAGSFLEWKGMLIRNLGFFLDMATFVMALGHYLHIWWLHGMAFHLVDAVLFFNIRALLGAIINRIKGFIRLQIALGALHAALPDATTEELQAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLSEIYTCPTCRKPLFVGRPEIDANSNPEEISSDEQLARQISVRLDWPNTPRHTMPAGLYRNQTPNSLEGIPWRGAGLDSGWLHSWPSQGVDGAGPSTAIRSVGLGRVQLMMRHLASVGETYAHTALEDAAWSLWPINPSQASASGSPIPSPTGRSPGGTGSLHMRTPSRTANDDLDNILAMAETVREVLPHIPDDVIFQDLQRTNSVTVTVNNLLQM 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1665 586 ProSiteProfiles CUE domain profile. 546 586 IPR003892 GO:0043130
Glsi04g1665 586 Pfam CUE domain 550 586 IPR003892 GO:0043130
Glsi04g1665 586 SUPERFAMILY RING/U-box 324 387 - -
Glsi04g1665 586 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 4 586 - -
Glsi04g1665 586 Pfam Ring finger domain 336 380 IPR001841 -
Glsi04g1665 586 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Glsi04g1665 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 387 IPR013083 -
Glsi04g1665 586 SMART ring_2 338 379 IPR001841 -
Glsi04g1665 586 CDD CUE_RIN3_plant 547 584 IPR035667 -
Glsi04g1665 586 Gene3D - 545 585 - -
Glsi04g1665 586 MobiDBLite consensus disorder prediction 509 540 - -
Glsi04g1665 586 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Glsi04g1665 586 CDD RING-H2_AMFR 336 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1665 Glsi-ChrGlsi04 57588593 57604051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1665 58 396 C3H Transcription Factor Family AT3G16090 26.685 6.75e-28 115