Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1655 ATGGCAATCATTGTCAGGCTATTCTTGAGTCTCATTTTATTCTCTTCAGTTTTCTCAATAGCATCATCATCAAGATCTTCCTCTAGCAACATAGATTGGTGGTGCAACCAAACCCCACACCCTGAGCCATGTAAACACTACTTGAGGCACAGCCACCACCAGAGTTTCAGACCCAAACACGGATCTGAGTTCCGGGGAATGCTGGTTCAATTGGCCTTGCAGGAAGCCCTAGCTATGCATAGGCTTGCCCACAACTATGGACCAAACTGTGCGACCAAGAAGCAGAAATGTGTATTCACTGATTGTTTGAAGCTCTATGACAACACCATCTTCCATCTTAATCGAACCCTTCAAGGACTACACAGCAAGAGGAGATGTTCCCTACTAGATGCACAAACTTGGCTCAGCACTGCTCTTACAAACATCGAAACCTGTCGAAGTGGAGCCTTTCAACTTAGTGTTCAAGATTTCATCGCGCCCAATGTGAGCAGCAATATTGTTACGGAGATGATAAGCAATAGCTTAGCCATCAATGGGGCATTTCTGAAGGCACAAGGAGAGAATCACACAGAAGAAGAAACAATAGATGCGTTTCCAAGTTGGTTTTCCAGGCATGAAAGGAGGCTGTTGAAGTCTTCTTCTGTAAAGGCACACATCGTGGTGGCAAAAGATGGTGCTGGGCATTTCAGGACTGTGCAAGGTGCCATTAATGCAGCAGCAAGGAGAAGAATCAAGACGAGGTTTATTATACATGTGAAGAGAGGGGTTTATAGAGAGAATATTGACGTTGATAAGAACAACGACAATCTCATGCTTGTTGGTGATGGGATGAGAAATACCATTATAACGAGTAGCAAAAGCGTTCAAGACGGCTTAACCACCTATAGCTCTGCAACAGCTGGCATAGATGCCCTTCACTTCATTGCACGTGACATAACCTTTAGAAACACAGCTGGTCCTCTAAAGGGTCAAGCAGTGGCGCTCAGATCAGCCTCCGACCTTTCGGTCTTCTACCGATGCTCCATTGAAGGTTACCAAGACACTCTCATGGCTCATGCACAGCGACAATTCTACAGGGAATGTACCATTTCCGGCACGGTGGACTTCATCTTTGGCAACGCAGCAGTTGTTTTTCAAAATTGTGTGATTCTTGTTAGAAGGCCTTCCAAAGGCCAAGCAAATATGATCACGGCCCAAGGTCGAGGTGACCCGTTTCAGAACACTGGAATTTCAATCCTCAATTCTCAGATTCGGGCTGCATCCGACCTCAAGCCTGTTGTTGGTGCGATCCAAACCTACTTGGGCCGGCCATGGCAGCAATATTCTAGAGTAGCTATCATGAAAACCTACATTGATAGCTCGGTGAGCCCATTGGGTTGGTCTCCATGGGGTAATACGAATTTTGCTCAGGATACGTTGTATTTTGCAGAATACAAGAACTTTGGGCCTGGTTCGTCTACAAGAAATAGGGTACAATGGCCAGGTTTTCATGCAATAACTAGCCCAAATGAGGCATCACGGTTCACCGTGGCTAGCCTCCTTGCTGGTCGCACATGGCTGCCTGCCATTGGTGTGCCGTTTACTTCCGGCCTCTAG 1596 0.4643 MAIIVRLFLSLILFSSVFSIASSSRSSSSNIDWWCNQTPHPEPCKHYLRHSHHQSFRPKHGSEFRGMLVQLALQEALAMHRLAHNYGPNCATKKQKCVFTDCLKLYDNTIFHLNRTLQGLHSKRRCSLLDAQTWLSTALTNIETCRSGAFQLSVQDFIAPNVSSNIVTEMISNSLAINGAFLKAQGENHTEEETIDAFPSWFSRHERRLLKSSSVKAHIVVAKDGAGHFRTVQGAINAAARRRIKTRFIIHVKRGVYRENIDVDKNNDNLMLVGDGMRNTIITSSKSVQDGLTTYSSATAGIDALHFIARDITFRNTAGPLKGQAVALRSASDLSVFYRCSIEGYQDTLMAHAQRQFYRECTISGTVDFIFGNAAVVFQNCVILVRRPSKGQANMITAQGRGDPFQNTGISILNSQIRAASDLKPVVGAIQTYLGRPWQQYSRVAIMKTYIDSSVSPLGWSPWGNTNFAQDTLYFAEYKNFGPGSSTRNRVQWPGFHAITSPNEASRFTVASLLAGRTWLPAIGVPFTSGL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1655 531 PANTHER PECTINESTERASE 13 521 - -
Glsi04g1655 531 CDD PMEI-like_3 33 183 - -
Glsi04g1655 531 NCBIfam pectinesterase inhibitor domain 1 178 IPR006501 GO:0004857
Glsi04g1655 531 Gene3D - 211 531 IPR012334 -
Glsi04g1655 531 Pfam Pectinesterase 218 516 IPR000070 GO:0030599|GO:0042545
Glsi04g1655 531 FunFam Pectinesterase 212 531 - -
Glsi04g1655 531 Pfam Plant invertase/pectin methylesterase inhibitor 30 177 IPR006501 GO:0004857
Glsi04g1655 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 181 IPR035513 -
Glsi04g1655 531 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Glsi04g1655 531 SUPERFAMILY Pectin lyase-like 214 530 IPR011050 -
Glsi04g1655 531 SMART PMEI_2 26 177 IPR006501 GO:0004857
Glsi04g1655 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 181 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1655 Glsi-ChrGlsi04 53544337 53546754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1655 26 531 Carbohydrate Esterase AT3G47400 61.509 0.0 653