Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1654 ATGCCTTTGAACTTTATTTACTCTTTCTGCGGTCTGGAGCCTTACAAGATCGTTTATTGGTCTGTGCCGTTAGTTCTCTCTGCTTTCACCATTTGGTCCTCTCTCTCTCGTATTTGCAAAGCTAGCAGCCATATAGATAGGGACCCTTTTGAGGAAGAAACCTTGCATTCTCTTCTTCGCTCTTTTCCTGGGTCTCTATCAGTAGCGGGTAGAGATCTGAAATGCTATAAACCAGAAAGTGCTGAAGAAAATGGTTTTCGTTTTTTGGCACTTTTTCACCTCTACGCTGGATGGTTTTTGCTGGCATCTTTTATTTATTTCTTTTACCATTTGTTTAAGAATTCTGTTGCACATAATAAGAAGGAATCAAGAAAAAGGGAGAATATGAATACTTTTTCTCATGTTCCCCCTGGTTTTAGGTTCCATCCCACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAAGTTACTTCAAGAGGGATTGACCTTGATGTCATAAAAGATGTTGACCTTTACAAAATTGAGCCATGGGATCTTCAAGAGATTTGCAGATTAGGAGCAGAAGAGCAAAATGAATGGTACTTCTTTAGCCACAAGGATAAGAAATATCCAACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGCTTTTGGAAAGCAACAGGAAGAGACAAGGCTATCTATTCAAAGCATGAACTGATAGGGATGAGGAAAACCTTGGTTTTTTACAAGGGTCGAGCCCCAAATGGACAAAAATCAGATTGGATTATGCACGAATACCGGCTTGAAACTGATGAAAATGGCACACCACAGGAAGAAGGATGGGTTGTGTGCAGAGTATTCAAAAAGAGAACAACCACCATGCGTAAAGTGAGTGAGCATGATTCCCCGTGTTGGTACGAAGACCAAGTCTCCTTCATGCAAGACTCGGACTCACCAAAGCGAAGATACGTGATCCCTTATAATCCTTGCAAGAAAGATCTTGAATTGCCATACCACCACGTGCCTCACGAGCACTTTCTCCAGGTTCCACTTTTAGAAAGCCCAAAGTTTAATCTTCAATCTGGAGGTTCCACCATAACCTCAAACCCAATGGCAGCTGCATATGCCACTAGTACTCTACAGAACTCATCACTGTTACCAGGAGATCAAGTTCAAGTTCAACAACAGAATGGTCAGCAAAACTTTGCACTGTATGGTAACAATGGCATTCATGAAGAAGCAGTTGATCAAGTGACTGATTGGCGAGTGCTTGACAAGTTTGTTGCTACACAACTTAGTCAAGAAGATGGTTCCAAAGACAATAGCTACTCAAATAATGCAGGAAGCATTTATCACACAATAATGGACAATGTCAATGAGCAGTTCAGAGATATGGACAAGCAGGAAATGGTGCCTGAGAATAATGCCTCAACGTCAACCTCAAGTTGCCCAATTGATTTGTGGAAATAG 1455 0.4137 MPLNFIYSFCGLEPYKIVYWSVPLVLSAFTIWSSLSRICKASSHIDRDPFEEETLHSLLRSFPGSLSVAGRDLKCYKPESAEENGFRFLALFHLYAGWFLLASFIYFFYHLFKNSVAHNKKESRKRENMNTFSHVPPGFRFHPTDEELVDYYLRKKVTSRGIDLDVIKDVDLYKIEPWDLQEICRLGAEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHELIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRTTTMRKVSEHDSPCWYEDQVSFMQDSDSPKRRYVIPYNPCKKDLELPYHHVPHEHFLQVPLLESPKFNLQSGGSTITSNPMAAAYATSTLQNSSLLPGDQVQVQQQNGQQNFALYGNNGIHEEAVDQVTDWRVLDKFVATQLSQEDGSKDNSYSNNAGSIYHTIMDNVNEQFRDMDKQEMVPENNASTSTSSCPIDLWK 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1654 484 MobiDBLite consensus disorder prediction 466 484 - -
Glsi04g1654 484 ProSiteProfiles NAC domain profile. 135 284 IPR003441 GO:0003677|GO:0006355
Glsi04g1654 484 Pfam No apical meristem (NAM) protein 136 263 IPR003441 GO:0003677|GO:0006355
Glsi04g1654 484 MobiDBLite consensus disorder prediction 465 484 - -
Glsi04g1654 484 FunFam NAC domain-containing protein 144 288 - -
Glsi04g1654 484 Gene3D NAC domain 144 288 IPR036093 GO:0003677|GO:0006355
Glsi04g1654 484 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 134 387 - -
Glsi04g1654 484 SUPERFAMILY NAC domain 132 284 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1654 Glsi-ChrGlsi04 53304312 53309332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1654 129 484 NAC Transcription Factor Family AT1G12260 56.667 9.44e-132 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi04g1654 NAM 3.8e-38 No_clan