Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1644 ATGAAACCTTCTCTTTTCTTTCTCACATTCTTCTTTTGTTACCAAACATACCCAGTTTTCTCTACTACAACTCTGCCCCTCCAACTCATCTCTCTGCTTTCAATAAAATCTTCCCTCATAGATCCTCTCAATAGCCTCCATGACTGGGACCCTTCTCCCACCTTCTCCAGGTCTAATAATCAAGACCCAGTTTGGTGTTCATGGTCAGGCATCACATGCCACCCAAGAACAGCTCACATCACCACCCTTGACCTCTCTCTTCGCAATCTTTCTGGTGCAATTTCACCCGAAATCCGGTACTTAACGACCTTAAACCACTTTAATCTCAGTGGAAATGACTTCAGTGGAACTTTCCAAGCAGCAATTTTTGAACTTACCGAGCTGAGGACTCTAGATATTAGCCACAACTACTTCAATTCAACTTTCCCACCTGGGGTATCAAAGCTCAAGTTCTTAAGGGTCTTCAATGCTTACAGCAACAACTTCATTGGTCCTCTGCCTCAAGAATTTATAAGACTTCGGTTTCTCGAGCAGCTCAACCTTGGTGGGAGCTACTTCGGGGATAAGATTCCATCAGGTTATGGCAGTTTAATAAGATTGAAGTTCCTTTATTTGGCTGGAAATCTCTTGGAAGGTGCAATACCACCTCAGTTAGGCTTCTTATCGCAGCTGGAACGCTTGGAAATCGGATATAACCAATTTTCAGGAGGAATACCAGTAGAATTGGCATTGTTATCTGGTCTCAAATACTTAGATATTTCCTCTGCTAACCTTTCTGGTTCTGTGATGCCAGAACTTGGCAACTTGACTATGCTGGAGACCTTGTTGCTTTACAAGAATCGCTTAATTGGTGAAATTTCATCAAGCTTTGGAAATTTGAAAGTTCTCAAAGCTCTCGATTTGTCAGATAATCAACTCACAGGGTCAATTCCTATAGAAATTTCCATGTTAAAGGAACTAACCATTTTGAGCTTAATGGACAACCAGCTAACGGGGGAAATACCACAAGGGATTGGAGACCTTCCCAACCTCGACACTTTGAATCTATGGAACAATTCACTAATTGGGATTCTCCCACAGACGCTTGGCTCCAATGGGTTACTCCAGAGACTAGATGTGTCCACGAATTTACTCACAGGTCCAATCCCACCAAGCGTTTGCGATGGAAACAAGCTGTTTAAGCTCATCCTCTTCGACAATAAATTTGACAGTGCTATTCCAGCATCACTCGCCAACTGCATTTCATTAATAAGGCTTCGAATCCAAAACAACCATCTCAACGGCTCAATCCCAGCTGGATTTGGCCTCCTCCCTAACCTCACCTTCGTCGACATGAGCAACAATAAATTCATGGGCCAAATCCCTGAAGATTTCGGCAATGCGATCAAATTAACGTACCTGAACATCTCCGGAAACTCCTTCGAAAACCCATTACCCAGCATCATCTGGAACGCCACAAATTTACAGATTTTCTCAGCAAGTTCATCAAAAATCAATGGCCGGATTCCAGATTTCATAGGTTGCCAGAGCATTTACAAAATTGAATTACAGGGAAATTCCCTCAATGGTAGCATCCCCTGGGACATTGGACACTGCGAGAGGCTTCTTCTACTGAATCTGAGCCGCAATTCGCTCACGGATATCATCCCGTGGGAAATCTCCACCCTGCCAGCCATTACCGATGTCGATCTCTCCCATAACTTCCTTACCGGTAGAATACCCTCCAACTTCAACAACTGTGCCACCCTCGAGAACTTCAATGTCTCCTTTAATTCGCTCACCGGACCCATTCCTTCGTCAGGTTCGATCTTCCCAAACCTACACCCCTCCTCCTTCTTCGGCAACGAAGGCCTCTGCGGCGACATTCTGGCGAAGCCATGCGCAGCGGATACCCTCGCCGCCGCAAACAACGAGGAGCAGCAGCTCCACACGCAGCACCCCAAGAGAACAGCCGGTGCAATAGTGTGGATCATCGCGGCGGCGTTTGGCATTGGGCTTTTCGCGCTCGTCGCTGGGACCCGCTGCTTCCGCGCCAATCATAGCAGTCGATTCAGCAACGCGCACGAGATTGGACCGTGGAAATTAACAGCATTCCAACGGTTGAATTTCACGGCGGAGGATGTCCTAGAATGCTTGATGGTGTCGGATAAGGTCATAGGAATGGGGTCTACAGGCACGGTGTTCAAGGCAGATATGCCAAGTGGCGAGGTCATAGCGGTGAAGAAGTTGTGGGGCAAGCAGAAGGATAATCGCATCAGACGGAGGAGAGGGGTTCTGGCTGAGGTGGATGTGTTGGGGAACGTAAGGCACAGAAACATAGTGAGATTGTTAGGGTGCTGCAGCAATAGGGAGTGCACGATGCTGCTGTATGAGTACATGCCTAATGGGAATTTAGATGACTTATTGCATGGAAAAAACAAAGGGGAGAATCTGGTGGGTGACTGGTTCACAAGGTATAACATAGCATTAGGGGTGGCTCAGGGGATTTGCTATCTTCACCATGACTGTGATCCAGTGATTGTGCATCGTGATCTGAAGCCTAGTAATATTTTACTGGACGGTGAGATGGAAGCCAGAGTGGCAGATTTTGGAGTGGCCAAGTTGATTCAGAGCGACGAGTCCATGTCTGTCATCGCTGGATCCTATGGCTACATTGCACCTGAATATGCTTATACCCTACAAGTTGATGAGAAGAGTGATATCTACAGCTTTGGAGTGGTGTTAATGGAGATTTTAAGCGGCAAGCGATCGGTTGATGCTGAGTTTGGTGATGGGAACAGCATTGTCGATTGGGTTAAGTCTAAGATCAAAACCAAAGATGGCATTGATGACATATTAGATAAGAATGTCGGAGGGGGGTGCGCGCCGGTGAGGGAGGAGATGATACAAATGCTCAGAATTGCTTTGCTTTGCACTAGCCGAAACCCGACAGACAGGCCTTCCATGCGAGATGTTGTGTTAATGCTTCAAGAGGTAAAGCCAAAGAGAAAATTGTTTGATAGCGTGGTAGAACAATGTGGTGGTAACAATATTGATGGCAGTGATGATATTCTTTTGCCACATAAGCCAAAAGTTGAAAGCTAA 3084 0.4614 MKPSLFFLTFFFCYQTYPVFSTTTLPLQLISLLSIKSSLIDPLNSLHDWDPSPTFSRSNNQDPVWCSWSGITCHPRTAHITTLDLSLRNLSGAISPEIRYLTTLNHFNLSGNDFSGTFQAAIFELTELRTLDISHNYFNSTFPPGVSKLKFLRVFNAYSNNFIGPLPQEFIRLRFLEQLNLGGSYFGDKIPSGYGSLIRLKFLYLAGNLLEGAIPPQLGFLSQLERLEIGYNQFSGGIPVELALLSGLKYLDISSANLSGSVMPELGNLTMLETLLLYKNRLIGEISSSFGNLKVLKALDLSDNQLTGSIPIEISMLKELTILSLMDNQLTGEIPQGIGDLPNLDTLNLWNNSLIGILPQTLGSNGLLQRLDVSTNLLTGPIPPSVCDGNKLFKLILFDNKFDSAIPASLANCISLIRLRIQNNHLNGSIPAGFGLLPNLTFVDMSNNKFMGQIPEDFGNAIKLTYLNISGNSFENPLPSIIWNATNLQIFSASSSKINGRIPDFIGCQSIYKIELQGNSLNGSIPWDIGHCERLLLLNLSRNSLTDIIPWEISTLPAITDVDLSHNFLTGRIPSNFNNCATLENFNVSFNSLTGPIPSSGSIFPNLHPSSFFGNEGLCGDILAKPCAADTLAAANNEEQQLHTQHPKRTAGAIVWIIAAAFGIGLFALVAGTRCFRANHSSRFSNAHEIGPWKLTAFQRLNFTAEDVLECLMVSDKVIGMGSTGTVFKADMPSGEVIAVKKLWGKQKDNRIRRRRGVLAEVDVLGNVRHRNIVRLLGCCSNRECTMLLYEYMPNGNLDDLLHGKNKGENLVGDWFTRYNIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQSDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSFGVVLMEILSGKRSVDAEFGDGNSIVDWVKSKIKTKDGIDDILDKNVGGGCAPVREEMIQMLRIALLCTSRNPTDRPSMRDVVLMLQEVKPKRKLFDSVVEQCGGNNIDGSDDILLPHKPKVES 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1644 1027 SMART LRR_typ_2 556 579 IPR003591 -
Glsi04g1644 1027 SMART LRR_typ_2 197 221 IPR003591 -
Glsi04g1644 1027 SMART LRR_typ_2 341 364 IPR003591 -
Glsi04g1644 1027 SMART LRR_typ_2 293 317 IPR003591 -
Glsi04g1644 1027 SMART LRR_typ_2 437 460 IPR003591 -
Glsi04g1644 1027 SMART LRR_typ_2 125 149 IPR003591 -
Glsi04g1644 1027 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 681 792 - -
Glsi04g1644 1027 SUPERFAMILY Protein kinase-like (PK-like) 716 989 IPR011009 -
Glsi04g1644 1027 Gene3D Transferase(Phosphotransferase) domain 1 793 1006 - -
Glsi04g1644 1027 Gene3D Ribonuclease Inhibitor 317 634 IPR032675 -
Glsi04g1644 1027 ProSitePatterns Protein kinases ATP-binding region signature. 719 742 IPR017441 GO:0005524
Glsi04g1644 1027 FunFam Leucine-rich repeat receptor-like protein kinase TDR 314 629 - -
Glsi04g1644 1027 Pfam Leucine rich repeat N-terminal domain 28 73 IPR013210 -
Glsi04g1644 1027 SUPERFAMILY L domain-like 315 619 - -
Glsi04g1644 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672|GO:0006468
Glsi04g1644 1027 Pfam Protein kinase domain 715 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1644 1027 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 257 990 - -
Glsi04g1644 1027 FunFam Leucine-rich repeat receptor-like protein kinase 28 190 - -
Glsi04g1644 1027 SMART serkin_6 713 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1644 1027 FunFam leucine-rich repeat receptor-like protein kinase TDR 793 1001 - -
Glsi04g1644 1027 Gene3D Phosphorylase Kinase; domain 1 686 792 - -
Glsi04g1644 1027 SUPERFAMILY L domain-like 60 383 - -
Glsi04g1644 1027 Gene3D Ribonuclease Inhibitor 29 316 IPR032675 -
Glsi04g1644 1027 ProSiteProfiles Protein kinase domain profile. 713 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1644 1027 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 215 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1644 Glsi-ChrGlsi04 52386946 52391457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1644 3 997 Receptor kinase-like Gene Family AT1G08590 43.180 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi04g1644 Pkinase 4.5e-46 CL0016