Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1642 ATGAAACACAATATAAACATCCAATCGATTTCTCTCCTCTATTTCATCAGGCAGCCGTGCTTCTCGTCTTCAGCTTTGGGAGACGAACCCATATCAACACAAGAGGTAACAATGGCGTACGCAGCGGTGAAGCCCACTAAGCCGGGTTTGGAGGAGCCCCAGGAGCAGATTCACAAGATCAGGATTACCCTTTCCTCTAAGCACGTGAAAAATCTTGAGAAAGTATGTGCGGACTTGGTTCGAGGTGCCAAGGACAAGAGGCTCAGGGTCAAGGGGCCTGTGAGAATGCCTACTAAAGTTCTTCACATCACTACCAGGAAATCCCCTTGTGGTGAAGGTACCAACACATGGGATAGATTTGAACTTCGTGTGCACAAGAGAGTTATCGACCTATACAGTTCCCCGGATGTGGTTAAGCAGATTACCTCAATTACAATTGAACCTGGTGTGGAAGTTGAGGTTACTATTGCAGATGCTTAA 480 0.4667 MKHNINIQSISLLYFIRQPCFSSSALGDEPISTQEVTMAYAAVKPTKPGLEEPQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1642 159 Gene3D Ribosomal protein S10 domain 43 158 IPR036838 -
Glsi04g1642 159 PRINTS Ribosomal protein S10 family signature 116 130 IPR001848 GO:0003735|GO:0005840|GO:0006412
Glsi04g1642 159 PRINTS Ribosomal protein S10 family signature 59 72 IPR001848 GO:0003735|GO:0005840|GO:0006412
Glsi04g1642 159 PRINTS Ribosomal protein S10 family signature 94 109 IPR001848 GO:0003735|GO:0005840|GO:0006412
Glsi04g1642 159 FunFam 40S ribosomal protein S20 44 158 - -
Glsi04g1642 159 Pfam Ribosomal protein S10p/S20e 61 155 IPR027486 -
Glsi04g1642 159 Hamap 30S ribosomal protein S10 [rpsJ]. 57 156 IPR001848 GO:0003735|GO:0005840|GO:0006412
Glsi04g1642 159 ProSitePatterns Ribosomal protein S10 signature. 83 98 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi04g1642 159 SUPERFAMILY Ribosomal protein S10 59 156 IPR036838 -
Glsi04g1642 159 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 41 158 IPR001848 GO:0003735|GO:0005840|GO:0006412
Glsi04g1642 159 SMART Ribosomal_S10_2 61 155 IPR027486 -
Glsi04g1642 159 NCBIfam 30S ribosomal protein S10 58 156 IPR005729 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1642 Glsi-ChrGlsi04 50961200 50980713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1642 38 159 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 90.164 4.17e-78 226