Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1628 ATGTCCATATTTTATGGCTTAGAACAAGATGCCAATGATCCACAGAGCTCTAGGGTTATTATTTTCTCTAACTATAGAGAAAGTGTGAGGGACATAATGGATGCACTAGCAAATATTGGGCAACCAGTCAAAGCTACCCAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCTGTGCTGGAGAAATTTCGATCTGGTGCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTCGATCTTGTTGTGTCTTTTGATGCTAACATATCACCATTAAGAATGATTCAGCGAATGGGGAGAACTGGAAGAAAGCATGATGGACAAATTCCACATGTCTTTAAACCAGAAGTTCAATTCGTTGAGCTGTCAATTGAGAAATTTGTTCCCCGTGAAAAAAAAGTGAAAGATGACCTTATTCAGATACCTGCCTCCTTAGACAAACTTACAATTGCTGAGATCGATTTACTCACAAAGTATTTTCACTCCACTGGTGAAAATACATGGAGACCATCTCTTACTGCCTTTCCTCACTTCCAGACATACCTTTCCAGAGTGCATAAAGTGAATCATTCGTATAGAACAACAATGCTTATAGATATGATGCAATGTCTGCAAGGACAAGCATCAATGCCAAAAGATAGTAAAACTTCCATTCTTCAGGATGACCCAGATAGCAAACTAATTGACTTAACTGAGCTTGAAGTTAAATCAGACAATGAATCACGCCCTAGGCATACAATCAGGAGCAATGCGGTCTTTGTAAACTGTCTGAAGCTGGATCCCTGTCATTTGGGAATTCAAACTGAAGACTTTGTTGATATAGCTGTGAAAGATAATATTTTTGGAGATGTAAAATCTCCTGGTACAAGTTGCATAAAGAATGATGATTTATTGTCATCTGGTTATTGTGACTTGGGTAAGCATCAAGAGAAAACATGCGAGGCTGACGAGACAATACCTGAGACTCCAATTGCTAAGAGGGGTATTGCAAATGAAGGATATAGTGTCGGTGAAATAGCTGTTCTTGTTGAGAACAAGACATCTTCAATGCTGGTTGATGCATTCAATAACGACCTGAAAGATGGAGAGTTTAGTCCTCGTTTAACTAATTTCATTAGAAGTGGTGTTGTTCCAGAGTCTCCCATTGATGAGAGGGGTGATTTGCTTCAAGGGCTGTCAAGAAATAAGTCTGTTATTCGGAACAGTAATCCTCCTGTTCATCTACAGGCAGAACAGCAAATTAGTTCTTTAAGTTCAAATGAAAAGGTCATTATTGAAAGTGGCACTGGTGTAAATAATGTCTCTATTTCTCTTGCTGATAATGAAACTCAAACCCCTTTATTCAAGCGGAAGAGCTGTGCAATTTTAAGAGGACATATCTTTATCTCTCCAATGGTTGAGGAGGGGCCGACTCTTGTTACAGACACTATAAATCATAGCTTCAGTGAAGAATCATTTTTTGGTTGTGGAGAAATGTCTGAAAGTGTTAAACCAGTGAACAAGTTTAAAAGGTTGCGTAAAGCTGTTGATGCTGGAAGAAGTAATAGGAATCAGAAATGCAGGAAGGATTGTGTTGCTCGAACAGAAAATCTTGTCAAATTATCATCCACCTCCAAACCGACAAGAAATGAGCACGGCCGAGGTAAGAGTAAATCAATGCATAGTGTCAGAATCTTCATTGACGAGGAGGCAGAGGTCTCTTCAAAAGCTGATGTATCTAATGATGAAGATGGAGAGGATGACAGTTCGTTTGATAGTTTCATAGATGACCGGATGAACTCTACAGCAACCAGTCAGCCTGGGGCTAGCAGAATAGACATGATGGCAATTTACAGGGTTAAACAAACACCAAACACAATAGAGTTACCAGATATGTAA 1926 0.3925 MSIFYGLEQDANDPQSSRVIIFSNYRESVRDIMDALANIGQPVKATQFIGQSSGKAMKGQSQKVQQAVLEKFRSGAYNVIVATSIGEEGLDIMEVDLVVSFDANISPLRMIQRMGRTGRKHDGQIPHVFKPEVQFVELSIEKFVPREKKVKDDLIQIPASLDKLTIAEIDLLTKYFHSTGENTWRPSLTAFPHFQTYLSRVHKVNHSYRTTMLIDMMQCLQGQASMPKDSKTSILQDDPDSKLIDLTELEVKSDNESRPRHTIRSNAVFVNCLKLDPCHLGIQTEDFVDIAVKDNIFGDVKSPGTSCIKNDDLLSSGYCDLGKHQEKTCEADETIPETPIAKRGIANEGYSVGEIAVLVENKTSSMLVDAFNNDLKDGEFSPRLTNFIRSGVVPESPIDERGDLLQGLSRNKSVIRNSNPPVHLQAEQQISSLSSNEKVIIESGTGVNNVSISLADNETQTPLFKRKSCAILRGHIFISPMVEEGPTLVTDTINHSFSEESFFGCGEMSESVKPVNKFKRLRKAVDAGRSNRNQKCRKDCVARTENLVKLSSTSKPTRNEHGRGKSKSMHSVRIFIDEEAEVSSKADVSNDEDGEDDSSFDSFIDDRMNSTATSQPGASRIDMMAIYRVKQTPNTIELPDM 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1628 641 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 11 125 - -
Glsi04g1628 641 FunFam ATP-dependent RNA helicase, putative 7 130 - -
Glsi04g1628 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 125 IPR027417 -
Glsi04g1628 641 MobiDBLite consensus disorder prediction 549 617 - -
Glsi04g1628 641 SMART helicmild6 30 121 IPR001650 -
Glsi04g1628 641 MobiDBLite consensus disorder prediction 556 589 - -
Glsi04g1628 641 Gene3D - 3 144 IPR027417 -
Glsi04g1628 641 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 6 165 IPR001650 -
Glsi04g1628 641 Pfam Helicase conserved C-terminal domain 15 120 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1628 Glsi-ChrGlsi04 48851322 48859919 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1628 20 119 Eukaryotic Initiation Factors Gene Family AT3G13920 29.000 1.97e-07 52.0