Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1624 ATGGCTTCCTCGGCAGCTACGCAGGTTCTATTCCACAATGCTGTCTTACATAATCGCCGAGCAACAAGATTCTTAGGAGGAAGAACCACAAACACCCAAAGCACCACTAATGCTGTGCGGGTTCGAGCCTCACAGGACCCTCGGGAGCGCCAGAGAGCACCCCCTGGAGTTGACACAAGAATCCATTGGGACAACGAAGACGAAGGTTGGATTGGAGGCAGCAATAACAGTAAAGAACAACAACCCAGTGCAGCGGAGGACCCCAAGAATCTGCTGGGCGAAAAGTTTGCTGATTTGCTTAGTGATTCTTCTGGTTCTCATTACGAATTTTTAGGAGTGTCAGCAGAAGCTGATTTGGAAGAGATTAAAGCAGCTTACAGGAGATTATCAAAGGAATACCACCCAGATACAACTTCGCTCCCTCTAAAAGCTGCCTCAGACAAATTCATGAAGTTGAGAGAAGTTTACAATGTTTTGAGTAATGATGAAAGCCGAAGATTTTATGATTGGACACTTGTTCAAGAGGCTGCCAGCCAGCAATCAGAGAAGATGAAAATGAGATTGGAGGATCCTTATGAGCAAGATGTGAAGAACTGGGAATCTGTTCCAGACATGGTAGATCGGCTTGGAGGAAGGAATATGAAGCTTAGTGATCAAGCGGTGACTGCCCTCACTATCGATGTGTTCATCATTATTTTTGCCATTTGCTGCATCATTTATGTAATGTTCTTTAAAGAACCATAG 744 0.4476 MASSAATQVLFHNAVLHNRRATRFLGGRTTNTQSTTNAVRVRASQDPRERQRAPPGVDTRIHWDNEDEGWIGGSNNSKEQQPSAAEDPKNLLGEKFADLLSDSSGSHYEFLGVSAEADLEEIKAAYRRLSKEYHPDTTSLPLKAASDKFMKLREVYNVLSNDESRRFYDWTLVQEAASQQSEKMKMRLEDPYEQDVKNWESVPDMVDRLGGRNMKLSDQAVTALTIDVFIIIFAICCIIYVMFFKEP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1624 247 MobiDBLite consensus disorder prediction 24 42 - -
Glsi04g1624 247 FunFam DnaJ homolog subfamily C member 4 95 193 - -
Glsi04g1624 247 Gene3D DnaJ domain 95 193 IPR036869 -
Glsi04g1624 247 ProSitePatterns Nt-dnaJ domain signature. 149 168 IPR018253 -
Glsi04g1624 247 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 1 247 IPR044618 -
Glsi04g1624 247 SUPERFAMILY Chaperone J-domain 106 175 IPR036869 -
Glsi04g1624 247 Coils Coil 112 132 - -
Glsi04g1624 247 MobiDBLite consensus disorder prediction 43 67 - -
Glsi04g1624 247 ProSiteProfiles dnaJ domain profile. 106 172 IPR001623 -
Glsi04g1624 247 MobiDBLite consensus disorder prediction 70 84 - -
Glsi04g1624 247 PRINTS DnaJ domain signature 126 141 IPR001623 -
Glsi04g1624 247 PRINTS DnaJ domain signature 144 164 IPR001623 -
Glsi04g1624 247 PRINTS DnaJ domain signature 108 126 IPR001623 -
Glsi04g1624 247 MobiDBLite consensus disorder prediction 22 87 - -
Glsi04g1624 247 Pfam DnaJ domain 107 169 IPR001623 -
Glsi04g1624 247 CDD DnaJ 107 161 IPR001623 -
Glsi04g1624 247 SMART dnaj_3 105 164 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1624 Glsi-ChrGlsi04 48398538 48400684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1624 107 169 C2H2 Transcription Factor Family AT1G74250 40.299 2.73e-08 52.4