LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi04g1606	ATGGATATGCCTTCCAGTAGTGGTAGTAATAGTACACAAGGGGCTGCTTCTTCTGCATATAGAGGTGTGCGCAAGAGGAAATGGGGGAAATGGGTGTCTGAAATCCGGGAGCCTGGTAAGAAGACCAGAATTTGGTTAGGGAGCTTCAAGACGCCCGAGATGGCAGCTGCAGCTTACGACGTCGCGGCCCTACATTTCCGGGGACGCGAGGCCAGGCTCAACTTCCCTGAACTGGCCGGCAGCCTTCCCCGCCCCGTGAGCAATGATGCTGATGACATTCGCATGGCTGCGCATGAGGCAGCCTTGAGGCTGAGGACCAATCCAGTGGCCGAGGAGGGTGGCAGGTCTTCCGGCTCCGGCATGGTGCCAGTCACCGTGAGGCTCTCGCCAACACAGATTCAGGCCATCAATGAGTCACCCCTGGACTCACCAAAGATGTGGATGCAAATGGCTGGGACGGTCATGTTGGAGGATGAATTCATGATGTTTGTGAATGACTACGAGGACAACGAGTGGGAAGAAATGCAAAGTGATTCTCTTTGGGATCCTTAG	552	0.5489	MDMPSSSGSNSTQGAASSAYRGVRKRKWGKWVSEIREPGKKTRIWLGSFKTPEMAAAAYDVAALHFRGREARLNFPELAGSLPRPVSNDADDIRMAAHEAALRLRTNPVAEEGGRSSGSGMVPVTVRLSPTQIQAINESPLDSPKMWMQMAGTVMLEDEFMMFVNDYEDNEWEEMQSDSLWDP	183

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi04g1606	183	MobiDBLite	consensus disorder prediction	1	21	-	-
	Glsi04g1606	183	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	10	150	-	-
	Glsi04g1606	183	Pfam	AP2 domain	19	68	IPR001471	GO:0003700\|GO:0006355
	Glsi04g1606	183	ProSiteProfiles	AP2/ERF domain profile.	19	76	IPR001471	GO:0003700\|GO:0006355
	Glsi04g1606	183	SUPERFAMILY	DNA-binding domain	18	77	IPR016177	GO:0003677
	Glsi04g1606	183	PRINTS	Ethylene responsive element binding protein signature	20	31	IPR001471	GO:0003700\|GO:0006355
	Glsi04g1606	183	PRINTS	Ethylene responsive element binding protein signature	58	78	IPR001471	GO:0003700\|GO:0006355
	Glsi04g1606	183	MobiDBLite	consensus disorder prediction	1	18	-	-
	Glsi04g1606	183	FunFam	Ethylene-responsive transcription factor 2	18	77	-	-
	Glsi04g1606	183	CDD	AP2	18	78	IPR001471	GO:0003700\|GO:0006355
	Glsi04g1606	183	Gene3D	AP2/ERF domain	19	77	IPR036955	GO:0003700\|GO:0006355
	Glsi04g1606	183	SMART	rav1_2	19	82	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi04g1606	Glsi-ChrGlsi04	38459541	38460092	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi04g1606	18	183	AP2-EREBP Transcription Factor Family	AT1G71450	64.327	7.10e-69	206

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi04g1606		AP2	6.6e-13	CL0081