Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1571 ATGAGTTATAGCTCCGGCGATAATGGAACCAGCACAACTGAGAACAATAATAAATACAAGGGAGTACGACGCCGGAAATGGGGCAAGTGGGTGTCAGAGGTCCGAGTTCCTGGCATGCAAGAGCGCCTCTGGCTGGGCACATACGCCTCGCTCGAGGCTGCAGCGATGGCTCACGATGTTGCTTTCTACTGTCTGAGGAGACCAACTTCGTTGGAGAAGCTCAATTTCCCAGAGATGTTGCCTTCTTGTTGTGTCCAACAGAGAAAGATGTCGCCCAGGTCCGTGCAGACGATGGCATCAGATGCTGGCATGGCTGTTGATGGACAGAGCATTGCAGCAGCAGCAGCAGCAGGAAAGACGTCCATGGTGGCAGCAAGCTATGATGAAAAGGAGAAAACCGATTATCACGTTGACAGGCATATCAATAGCAATGTTCGTGAGGGACCATGTGAGAAGGATGGTTTTTGGTGGGACGGTGAGGGTCATGATGGTGGGACATGGCAAAGAAGAGAAGGTTATAGAGAAGAGGAAGCCTCGAGCATTTCCATAGATGACTATTTTAATTTTTAG 570 0.4982 MSYSSGDNGTSTTENNNKYKGVRRRKWGKWVSEVRVPGMQERLWLGTYASLEAAAMAHDVAFYCLRRPTSLEKLNFPEMLPSCCVQQRKMSPRSVQTMASDAGMAVDGQSIAAAAAAGKTSMVAASYDEKEKTDYHVDRHINSNVREGPCEKDGFWWDGEGHDGGTWQRREGYREEEASSISIDDYFNF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1571 189 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Glsi04g1571 189 SMART rav1_2 18 83 IPR001471 GO:0003700|GO:0006355
Glsi04g1571 189 Gene3D AP2/ERF domain 17 79 IPR036955 GO:0003700|GO:0006355
Glsi04g1571 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 125 - -
Glsi04g1571 189 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Glsi04g1571 189 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Glsi04g1571 189 ProSiteProfiles AP2/ERF domain profile. 18 77 IPR001471 GO:0003700|GO:0006355
Glsi04g1571 189 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Glsi04g1571 189 CDD AP2 18 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1571 Glsi-ChrGlsi04 25978405 25978974 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1571 11 107 AP2-EREBP Transcription Factor Family AT1G22810 61.856 1.48e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi04g1571 AP2 1.1e-11 CL0081