Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1567 ATGGGGTGCCTCTGCTCAAAAGATTCATCAGACAAGGATAAAGATGATGGATGTGAGAAAGAAAAGGAGTTAAGCAAGTCTTCAGTACAACTGGTTGCTCCCTCTCTCTCAACTGCACAGTTAGGTGGTGGTGGTACTGATGGTTCAGTGCATCGCATGCTTAAGACATATTCACAAGCAAATCTGGGGTTTGTTGATGGACTATCAGAAGATAAAAACAACCAGAAGGTAGTTAATGGAAAACCAAAAAAAGGCTACCATCAGAGATGTATAACATTAGACGTCAGTGTTGGGGAAGGAAAGCCAGTGATGTCTAGAATACTTAGCATGCCAAAAAGTGCAGAAGATATTGGTGCTGGATGGCCATCTTGGTTATCTTCAGTTGCAGGAGATGCCATCAAAGGGTGGGAGCCTCGATGGGTAGACTCTTTCGAGAAGTTAGGCCAAATTGGACAAGGGGCTTATAGCAGTGTACATAAAGCCCGTGACCTTCAAACTGGTAAAATTGTGGCATTGAAGAAAGTGCGTTTTTCAAATTCTGATGCCGAAAGTGTCCGTTTTATGGCTAGGGAAATCTATATTTTGCGTAAACTTGACCATCCAAATGTCATGAAGCTTGAGGGTATTGTCACATCAATGACGTCCAGCAGCTTGTATCTTGTTTTTGAGTACATGGAGCATGACCTTGCTGGACTGGAAGCAACCCCTGGCATAAAGTTCACAGAACCACAGATTAAATGTTATATGAAGCAATTGCTTTGTGGGCTTGAACACTGCCATAGTCGTGGTGTGCTTCACCGTGACATCAAGGGTTCAAATCTGCTGATTGACAGAAATGGAATTCTTAAGATTGGAGACTTTGGTCTTGCAAATGTTTATGATCCTAATAAAAATCAGCCATTGACTAGCCGTGTTGTGACTCTGTGGTATAGGCCACCTGAGCTTTTGCTTGGGGCTACAGAGTATGGAGCTGCAATTGACTTGTGGAGTGCTGGTTGCATTCTAGCAGAACTACTGGCGGGGAAGCCTATTATGCCTGGAAGAACAGAGGTGGAACAAATGCACAAGATTTTTAAGCTTTGTGGTTCCCCATCTGAAGGGTTTTGGCAGAGAACAAAATTGCCACATGCAACAAGTTTTAAACCCCAACACCCTTACAAACGCCGCATTGCTGAAACATTTAGAGACTTTCCTCCTTCTGCCTTGGCTCTTGTTGATAAGCTCCTTGCAATAGAACCAGAAGATCGAGGATCAACAACTTCTGCACTTAAGACTGAGTTCTTCACAACAAACCCCCTACCTTGTGACCCATCAAGTTTACCAAAGTTTCCTCCAAGCAAGGAGTTTGATGCCAAGCTTCGAGATGTGGAAGCAAGAAGGAAAAACACAGAAGCTGTGAAAAGACGTGGACCAGTGTCTGTTACAAGGGGTGCAATAGATACCAATGCACTGCGAACACCAGACTTCAATGCTCAGGGAGATAGACCTGTACAGGTGAATCCAAATACTAAAACTTCCAGTGATAAATATAACCCCCGTGAGGATGGTAGGTCTCACTTTAAGATTGAGCAAACCAGCGTATCTGTACAGAATGGCTACTGTCATTCTACTTCAGGGATGCATGCCTCTACACAGAGATCTCATGTAAACCAGGGAGTAGCAGATTTATCTAACTCTTCTCTTAAAAAGGACAATGGCATGACTGGCAGAGAACCTGAAATGGGGCATTTACCCAAGAAAAATAGGATGCACCACTCTGGACCATTGGTACCTCCGGGAGGTAACATTGATGACATGCTCAGAGAGCACGAGAGATTAATGCAGGAGGCATTCCGTAGTGTCAAGGACAAGAGCAATCATAAAAATAAAAATTACTATTAA 1881 0.4343 MGCLCSKDSSDKDKDDGCEKEKELSKSSVQLVAPSLSTAQLGGGGTDGSVHRMLKTYSQANLGFVDGLSEDKNNQKVVNGKPKKGYHQRCITLDVSVGEGKPVMSRILSMPKSAEDIGAGWPSWLSSVAGDAIKGWEPRWVDSFEKLGQIGQGAYSSVHKARDLQTGKIVALKKVRFSNSDAESVRFMAREIYILRKLDHPNVMKLEGIVTSMTSSSLYLVFEYMEHDLAGLEATPGIKFTEPQIKCYMKQLLCGLEHCHSRGVLHRDIKGSNLLIDRNGILKIGDFGLANVYDPNKNQPLTSRVVTLWYRPPELLLGATEYGAAIDLWSAGCILAELLAGKPIMPGRTEVEQMHKIFKLCGSPSEGFWQRTKLPHATSFKPQHPYKRRIAETFRDFPPSALALVDKLLAIEPEDRGSTTSALKTEFFTTNPLPCDPSSLPKFPPSKEFDAKLRDVEARRKNTEAVKRRGPVSVTRGAIDTNALRTPDFNAQGDRPVQVNPNTKTSSDKYNPREDGRSHFKIEQTSVSVQNGYCHSTSGMHASTQRSHVNQGVADLSNSSLKKDNGMTGREPEMGHLPKKNRMHHSGPLVPPGGNIDDMLREHERLMQEAFRSVKDKSNHKNKNYY 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1567 626 CDD STKc_CDK9_like 144 428 - -
Glsi04g1567 626 FunFam probable serine/threonine-protein kinase At1g54610 131 226 - -
Glsi04g1567 626 Gene3D Phosphorylase Kinase; domain 1 137 231 - -
Glsi04g1567 626 ProSiteProfiles Protein kinase domain profile. 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1567 626 PANTHER CELL DIVISION PROTEIN KINASE 142 434 - -
Glsi04g1567 626 MobiDBLite consensus disorder prediction 485 507 - -
Glsi04g1567 626 SMART serkin_6 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1567 626 Gene3D Transferase(Phosphotransferase) domain 1 232 468 - -
Glsi04g1567 626 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524
Glsi04g1567 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Glsi04g1567 626 MobiDBLite consensus disorder prediction 1 29 - -
Glsi04g1567 626 MobiDBLite consensus disorder prediction 566 580 - -
Glsi04g1567 626 MobiDBLite consensus disorder prediction 483 517 - -
Glsi04g1567 626 FunFam probable serine/threonine-protein kinase At1g54610 227 468 - -
Glsi04g1567 626 SUPERFAMILY Protein kinase-like (PK-like) 138 436 IPR011009 -
Glsi04g1567 626 MobiDBLite consensus disorder prediction 557 588 - -
Glsi04g1567 626 Pfam Protein kinase domain 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1567 626 MobiDBLite consensus disorder prediction 7 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1567 Glsi-ChrGlsi04 25588739 25602369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1567 136 469 Core Cell Cycle Gene Families AT5G10270 53.868 6.36e-123 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi04g1567 Pkinase 1.8e-68 CL0016