Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1565 ATGGAAATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATGCAGCAGTTTACTCACAATAGTGACGGTTAGATGTGGGCACTGTGCCAATTTGCTATCAGTTAACATGGGTGCATCACTTCAAGCATTTCCTGCTCAACAAGACCCTCAGTCACTGAAACAGTACCTAAGTTTAGAAGAATCAAGCAGCAAGGAACTTGGATCATCTTCAAAATGCAACAAATTAGCTCCATTTGAGTTTGTAGATCAGCATGAGCAACCTAGGATTCCTCCCATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAATCGGTTCATTAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGAGAGGCTTTTAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGAGGGAATCAAGCAAGCAAAGTTGGACCAGGGGGAGGGAACTCAAAAATCTAATGGATTCTACTGA 549 0.4353 MEMMATERVCYVHCNFCNTILAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQAFPAQQDPQSLKQYLSLEESSSKELGSSSKCNKLAPFEFVDQHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLEGIKQAKLDQGEGTQKSNGFY 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1565 182 CDD HMG-box_SF 113 149 - -
Glsi04g1565 182 SUPERFAMILY HMG-box 104 152 IPR036910 -
Glsi04g1565 182 PANTHER PROTEIN YABBY 6-RELATED 5 168 IPR006780 GO:0007275
Glsi04g1565 182 Pfam YABBY protein 5 159 IPR006780 GO:0007275
Glsi04g1565 182 FunFam Axial regulator YABBY 104 174 - -
Glsi04g1565 182 Gene3D High mobility group box domain 96 155 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1565 Glsi-ChrGlsi04 25216596 25222432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1565 4 182 C2C2-YABBY Transcription Factor Family AT1G08465 66.120 9.88e-81 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Glsi04g1565 YABBY 2e-73 CL0114