Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1564 ATGTCTTCGCAAACCCTATTTCTCTCTGCTTCTCTTATGGAAGAAGCTAACACCACACAAGGATGTGTCATTGCTCCGGCTTCTTACCGGGGAGTTCGCAAGCGAAAATGGGGCAAATGGGTGTCAGAAATCCGTGAGCCTGGCAAGAAAACCCGAATATGGTTAGGCATCTATGAGGCACCGGAAATGGCAGCAGCAGCATATGATGTGGCGGCTTCATATCTACGAGGACCATCGGCACGGCTTAATTTTCCCAAATTCTCCTGTGCTCTGCAACAGCCAGCAAGCTCCAGAGCTGAGGACATCCGGCTGGCAGCTCAACAAGCAGCATTGCGGTTCAGGAGACCAGTGAGATGCCGGTCATCAGAGAAAGCCCGCAGCATGGTTCCGGCAACGGCTGGGCTTTCACCGAGCCAAATTCAGGCCATCAATGATTCACCATTGGATTCACCAAAGATGTGGATGCAAATGCCTGAGGTTTTCATGTTAGGATATGATGAGTCTATGATATTGTATGATGATGATCATGTATTGGAGCCGAGTGGATGGGAGGATATACAGCATGACTCCATATGGGATTTCTAA 585 0.4923 MSSQTLFLSASLMEEANTTQGCVIAPASYRGVRKRKWGKWVSEIREPGKKTRIWLGIYEAPEMAAAAYDVAASYLRGPSARLNFPKFSCALQQPASSRAEDIRLAAQQAALRFRRPVRCRSSEKARSMVPATAGLSPSQIQAINDSPLDSPKMWMQMPEVFMLGYDESMILYDDDHVLEPSGWEDIQHDSIWDF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1564 194 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Glsi04g1564 194 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Glsi04g1564 194 SUPERFAMILY DNA-binding domain 29 85 IPR016177 GO:0003677
Glsi04g1564 194 Pfam AP2 domain 29 77 IPR001471 GO:0003700|GO:0006355
Glsi04g1564 194 CDD AP2 29 85 IPR001471 GO:0003700|GO:0006355
Glsi04g1564 194 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700|GO:0006355
Glsi04g1564 194 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Glsi04g1564 194 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Glsi04g1564 194 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Glsi04g1564 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1564 Glsi-ChrGlsi04 23888569 23889153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1564 26 193 AP2-EREBP Transcription Factor Family AT1G71450 46.927 1.83e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi04g1564 AP2 1.4e-13 CL0081