Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1558 ATGTCCCCGGCCAGATCTTACTCTTCAAAAGACATCTCTGCTAAAGCTCTACTAGCATCCTTCTCAGCAAACAGAGCACAAGGTTCATATTCTCACCAAACAGGCAATCACCTTGATGAACAATCTCAGAATTATTTATTAGAAATGATAACAAGGTTAGAGGATCCCTCAAGAATGAATAGCAACTCTCTCTCTCTCTGGGTTCCCCTCATTGCACTTTTTGCATCTTTCTGTCTCATAAATAATCCTAACCAACAGTTTCTTTACTATTTTTCTGAGTTCAGTCTCACATCCTTTTCCTCACCATCTGCATTATTGTTTCTGGCACATCACCATCATCCCCACAAGAAACGCCATGATAATAGCAGCAATGCAGGTTCCAATGTTTGTGATGATTTTCCACCAGGAATTCCTCCCCCAAACACCAACACAACCTCCTATCTTTGTGTTGATCGAAGAGGGTGCTGCAATTTCACCACCGTGCAAGCAGCTGTTAATGCAGTTCCAGATTTTAGCGAGAAAAGAACCATTATATGGATTAACAGCGGCATTTATTATGAGAAAGTCATGGTGCCTAGAACCAAACCCAATATTACATTTCAAGGACAAGGCTACACTTCAACTGCAATTGCATGGAATGACACTGCAAAGTCTGCAAATGGCACATTTTATAGTGGCTCTACGCAAGTTTTCTCCTCAAGCTTCATTGCTAAGAACATAAGCTTCATGAACCTAGCACCAATTCCAAGTCCTGGGGCTGAAGGAGCACAAGCAGTAGCATTAAGAATATCAGGTGATCAAGCTGAATTTTGGGCTTGCGGATTCTTTGGAGCTCAAGATACCCTTCATGATGATAGGGGCCGCCATTACTTCAAAGATTGCTATATTCAAGGCTCCATTGATTTTATATTTGGCAATGCTAGGTCACTCTATGAGAACTGTCAATTAATTTCAATGGCAAACCCAGTAGCCCCAGGAGTAAGGTTCATAAATGGAGCTGTAACAGCTCATGGTAGAGCTACCAGTGATGAAAATACAGGGTTTGCTTTCGTCAATTGTACCATAGGAGGTACTGGAAGAATATGGCTAGGTCGGGCATGGCGTCCATACTCTCGTGTTGTTTTTGCCTTCACAACAATGTCAGATATCATTGCCCCTGAAGGGTGGAATGACTTCAACGACCCCACAAGAGATCAGACTATATTCTATGGAGAATACAACTGCTCAGGCCCTGGGGCTAATACGGCTTTGAGGGCGCCTTATGTACATAGATTAAATGAAACACTCGCTTCTTCTTTCCTGAATGCAACATTTATTGATGGGGATCAATGGTTGCAACCTTTCAAATAA 1350 0.4215 MSPARSYSSKDISAKALLASFSANRAQGSYSHQTGNHLDEQSQNYLLEMITRLEDPSRMNSNSLSLWVPLIALFASFCLINNPNQQFLYYFSEFSLTSFSSPSALLFLAHHHHPHKKRHDNSSNAGSNVCDDFPPGIPPPNTNTTSYLCVDRRGCCNFTTVQAAVNAVPDFSEKRTIIWINSGIYYEKVMVPRTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSTQVFSSSFIAKNISFMNLAPIPSPGAEGAQAVALRISGDQAEFWACGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNARSLYENCQLISMANPVAPGVRFINGAVTAHGRATSDENTGFAFVNCTIGGTGRIWLGRAWRPYSRVVFAFTTMSDIIAPEGWNDFNDPTRDQTIFYGEYNCSGPGANTALRAPYVHRLNETLASSFLNATFIDGDQWLQPFK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1558 449 ProSitePatterns Pectinesterase signature 2. 296 305 IPR033131 -
Glsi04g1558 449 Gene3D - 141 449 IPR012334 -
Glsi04g1558 449 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 136 446 - -
Glsi04g1558 449 SUPERFAMILY Pectin lyase-like 147 448 IPR011050 -
Glsi04g1558 449 Pfam Pectinesterase 150 442 IPR000070 GO:0030599|GO:0042545
Glsi04g1558 449 FunFam Pectinesterase 142 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1558 Glsi-ChrGlsi04 23521013 23527532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1558 128 446 Carbohydrate Esterase AT1G05310 73.354 0.0 530