Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1553 ATGGTTAAGCATAACAATGTTATCCCAAATGGACACTTCAAGAAACACTGGCAGAACTATGTCAAGACGTGGTTTAATCAACCTGCTAGGAAAACACAGAGACGACTTGCAAGACAGAAGAAAGCCGTGAAAAGTTTTCCCCTGCCAACTGCTGGACCACTCCGTCCTATTGTTCATGGGCAGACTCTGAAATACAATAGGAAAGTGAAGGCTGGCAGGGGCTTCTCTCTAGAAGAATTGAAGGGGGCTGGCATTTTCAATAAAGTTGCAAGAACTGTAGGGATAGCTGTTGATCATCGGAGGAAGAATCGTTCCCTTGAGAGTCTCCAGGTCAATGTGCAGAGGCTAAAGACTTACAAGGCTAAGTTGGTTGTCTTTCCAAGATGGGCTCGCAAATCTAAGGCTGGTGATTCTGCTTCAGAGGAGCTAGCCACAGCAACTCAGGTCCAGGGTCCTTACATGGCCATTGTACGTGAGAACCCATCTGTGGAGCTTGTGAAAGTTACTGAAGAGATGAAGTCATTCAAAGCTTACAACAAATTACGTTTAGAGCGGACGAATGAACGCCACATTGGTGCAAGATTGAAGAAGGCTGCTGAGGCTGAGAAGGAAGAGAAGTAA 621 0.4573 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKTQRRLARQKKAVKSFPLPTAGPLRPIVHGQTLKYNRKVKAGRGFSLEELKGAGIFNKVARTVGIAVDHRRKNRSLESLQVNVQRLKTYKAKLVVFPRWARKSKAGDSASEELATATQVQGPYMAIVRENPSVELVKVTEEMKSFKAYNKLRLERTNERHIGARLKKAAEAEKEEK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1553 206 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Glsi04g1553 206 Gene3D - 167 206 - -
Glsi04g1553 206 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Glsi04g1553 206 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Glsi04g1553 206 PANTHER 60S RIBOSOMAL PROTEIN L13 1 204 IPR001380 GO:0003735|GO:0005840|GO:0006412
Glsi04g1553 206 FunFam 60S ribosomal protein L13 166 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1553 Glsi-ChrGlsi04 22725944 22727298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1553 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 79.058 5.20e-113 319