Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1540 ATGGGGTCCGAGTCCGAGTCGAGGAGTCTCCGGCCATCGGTTTCTCCAGCTAGTGCTGAACCTAGCCACTTCTTCAAGGTCATACTTCCCGAAGCCATTCATGGCAAGAAACTGAAAATCCCAAAGGAATTTATAAAAAGATTTGGGAACGAACTATCTAGTGTGGCAACAGTAACTGTTCCAGATGGTCTTGTTTGGAAAATGGAATTGCGGAAATCTGCTAATGAGGTTTGGTTATGCGATGGTTGGCCAGAATTTGTAAAATACTACTCTATCAGTTATGGTTCCTTTCTAGTCTTCAAACATGAAGGGAATTCAAATTTCTGTGTTGTTATATTTGATATGACTGCTGCTGAGATTTATTATCCATGCAACAATCTGAGTAACAATGTGGAACCCAACTTTGAGAACCAGCCCTTAGAGTGTCCTAGGAAAAGGTCCTGCCTTGATCATTGTGGCTATGACACGAGAAACAAAAGGCGTCAGCTGGAAAATCCAGAAGAAATAATTGATTTAGATAATGTCAATGCACCAAGCCATGGCAAATCACGAAAGAATGTAAGTTACGATCTTTATGAGCATTCAAGAAAAAATGGAAAAGATAGATATAGGCAAGGCGATACTGAAAGAATGTCTCACTCTTCTAAGATGGAAACTCTGGGAGAAATAATTGATATAGATAATGTCAATTCGCCAAATCATGATAAATCAAGAAAGAATGCAAGTTATAATCTTCATGAGCATTCAAGAAAAGATGGGAAGGATATATATGGGCAAGGCCATTCTAAAAGAATGTCGCACTCTTCTAGCAAATTGGAGAGCTTGACATTTAAAAAAAAGCAAAGAGCTATCGAAGCTGCCCAAAAGTTCAAGCCAAAAAATCCTTCTTTCACTGCAATATTAAAGCCATCTAGTACTAACCGCTGTCTGGTGAGGAATATTCAGAACTTATGA 954 0.3889 MGSESESRSLRPSVSPASAEPSHFFKVILPEAIHGKKLKIPKEFIKRFGNELSSVATVTVPDGLVWKMELRKSANEVWLCDGWPEFVKYYSISYGSFLVFKHEGNSNFCVVIFDMTAAEIYYPCNNLSNNVEPNFENQPLECPRKRSCLDHCGYDTRNKRRQLENPEEIIDLDNVNAPSHGKSRKNVSYDLYEHSRKNGKDRYRQGDTERMSHSSKMETLGEIIDIDNVNSPNHDKSRKNASYNLHEHSRKDGKDIYGQGHSKRMSHSSSKLESLTFKKKQRAIEAAQKFKPKNPSFTAILKPSSTNRCLVRNIQNL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1540 317 PANTHER B3 DOMAIN-CONTAINING 19 288 - -
Glsi04g1540 317 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Glsi04g1540 317 MobiDBLite consensus disorder prediction 193 215 - -
Glsi04g1540 317 SUPERFAMILY DNA-binding pseudobarrel domain 19 115 IPR015300 -
Glsi04g1540 317 Pfam B3 DNA binding domain 24 114 IPR003340 GO:0003677
Glsi04g1540 317 SMART B3_2 24 116 IPR003340 GO:0003677
Glsi04g1540 317 MobiDBLite consensus disorder prediction 229 261 - -
Glsi04g1540 317 MobiDBLite consensus disorder prediction 227 275 - -
Glsi04g1540 317 Gene3D - 16 117 IPR015300 -
Glsi04g1540 317 CDD B3_DNA 23 114 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1540 Glsi-ChrGlsi04 22217844 22220708 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1540 21 140 B3 DNA Binding Superfamily AT3G18990 42.975 1.84e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi04g1540 B3 7.4e-14 CL0405