Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1538 ATGGGGTCCGGGTCCGGGTCCGGGTCGAGGAGTCGCCAGCGTATCTGTATCCGTCCATCGGTTTCTTCAGCTAGTGCTGAACCTAGCCACTTCTTCAAGGTCATACTTCCCGAAGCCATTCATGGAGAGAAACTGAGAATTCCAAAGGAATTTATAAAAAGATTTGGAAATGAACTATGTAGTGTGGCAACAGTTACAGTTCCGGATGGTCTTGTTTGGAAAATGGGATTGAAGAAATCTGCTAATGAGGTTTCGTTATGTGATGGTTGGCCGGAATTTGTTAAATACTATTCTATCAGTTATGGCTCCTTTCTAGTCTTCAAATATGAAGGAAATTCAAATTTCTGTGTTGTTATATTTGATATGACTGCTGCTGAGATTTACTATCCTTGCAACAACCAGAGTAACAATGGGGAACCTAACTTTGAGAACCAGCACTTAGAGTGTTCTATGAAAAGGTCCTGTCTTGATCATAGTGGCTATGACACAAGGAACAAAAGGCTTAAACTGGAAAATCAAGAAGAAATAATTGATTTAGATAACGTCAATGCACCAAGCCATGGCAAATCAAGAAAGAATGTAACTTATGATTTTCATGAGCATTCAAGAAAAAATGGAAAAGATAGATATAGGCTAGGCCATACTAAAAGAATGTCTTACTCTTCTAAGCTGGAAATTCTGGAAGAAATAATTGATGTAGACAATGTCATTTCGCCGAGTCACAATAAATCAAGAAGGAATGCAAATTATAATCTTCGTGAGCATTCAAGAAAAGATGGAAAAGATATATATAGGCAAGGCCATACTAAGAGAATGTCTCACTCTTCTGGCAAATTGGAGAGCTTGACATTGACAAAAAAGCAAAGAGCTATTAAAGCTGCCCAAAAGTTCAAGCCAAAAAATCCTTCTTTCACTGCAATATTAAAGCCATCTAATCTTAAAGTTCTGCATGTGCCTGCTTCATTTGTTGCAAAATATCTGGCGAAAATGGGTTCTGTGGAGTTCCTGGAGTCTAAGGGACAACATTGGGCTGTTCATTGCACTTATTATAAAGATAAATGCTCAACTATGCGATTAGGGAAGGGTTGGATCGATTTTGCCAGGGACCACCATTTGAGGGAAGGAGATGTCTGAATTGGACATTTGTGTCTTCCTTGGGGTTTTATTTGGGGAGCATGTAATGTAACTGTTTGTAGCATGAAATTGTTGCGTATCATTTTGATGCATGACTGCAGGTGGACCATGAATTCTGTTTCTACAGCATCTTAA 1269 0.3893 MGSGSGSGSRSRQRICIRPSVSSASAEPSHFFKVILPEAIHGEKLRIPKEFIKRFGNELCSVATVTVPDGLVWKMGLKKSANEVSLCDGWPEFVKYYSISYGSFLVFKYEGNSNFCVVIFDMTAAEIYYPCNNQSNNGEPNFENQHLECSMKRSCLDHSGYDTRNKRLKLENQEEIIDLDNVNAPSHGKSRKNVTYDFHEHSRKNGKDRYRLGHTKRMSYSSKLEILEEIIDVDNVISPSHNKSRRNANYNLREHSRKDGKDIYRQGHTKRMSHSSGKLESLTLTKKQRAIKAAQKFKPKNPSFTAILKPSNLKVLHVPASFVAKYLAKMGSVEFLESKGQHWAVHCTYYKDKCSTMRLGKGWIDFARDHHLREGDVXIGHLCLPWGFIWGACNVTVCSMKLLRIILMHDCRWTMNSVSTAS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1538 422 CDD B3_DNA 302 377 IPR003340 GO:0003677
Glsi04g1538 422 SMART B3_2 31 123 IPR003340 GO:0003677
Glsi04g1538 422 SMART B3_2 304 401 IPR003340 GO:0003677
Glsi04g1538 422 SUPERFAMILY DNA-binding pseudobarrel domain 298 377 IPR015300 -
Glsi04g1538 422 CDD B3_DNA 30 121 IPR003340 GO:0003677
Glsi04g1538 422 ProSiteProfiles B3 DNA-binding domain profile. 301 401 IPR003340 GO:0003677
Glsi04g1538 422 Pfam B3 DNA binding domain 314 377 IPR003340 GO:0003677
Glsi04g1538 422 Pfam B3 DNA binding domain 31 121 IPR003340 GO:0003677
Glsi04g1538 422 Gene3D - 282 386 IPR015300 -
Glsi04g1538 422 Gene3D - 22 124 IPR015300 -
Glsi04g1538 422 PANTHER B3 DOMAIN-CONTAINING 24 380 - -
Glsi04g1538 422 SUPERFAMILY DNA-binding pseudobarrel domain 25 122 IPR015300 -
Glsi04g1538 422 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1538 Glsi-ChrGlsi04 22178526 22182742 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1538 243 389 B3 DNA Binding Superfamily AT3G18990 27.333 5.50e-16 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi04g1538 B3 6.9e-13 CL0405