Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1537 ATGGGGTCCAAGTTCGGGTCGAGGAGTCGCTGGCATAGTTGTGTCGGGCCATCAGTTTCTCCAGCTAGTGCTGAACCTAACCACTTCTTCAAGATCATACTTCCCGAAGCCATTCATGGCAAGAAACTACCTTCTATGCTGTTGCATGCCCAGTTCTTTATGAGTTCTATTGCACTTACGGTGTTTTTGCCCAATCTTTACGAAATCTACGCTGGTCTTAAACCCGCATTTGCTAGAATTCCAAAGGAATCTATAAGAAGATTTGGGAACGAACTATCTAGTGTGGCAACAGTTACTGTTCCGGACGGTCTTGTTTGGAAAATGGGATTGAAGAAATCTGCTAACGAGGTTTGGTTTTGCGATGGTTGGCAGGAATTTGTAAAGTACTATTCTATCAGTTACGGCTCCTTTCTAGTCTTCAAATATGAAGGGAATTCAAATTTCTGTGTTGTTATATTTGATATGACTGCTGCTGAAATTTACTATCCATGCAAAAATCAGAGTAACAGTGGGGAACCTAACCTTGAGAATCAGCATTCAGAGTGTCTTAGGAAAAGGTCCAGTCTTTATCACTGTGGCTTTGACACGAGGAGCAAAAGGCATAAACTGGAACATCAAGAGGAAATAATTGATTTAGATAATGTCAATGCACCGACCCATGGCAAATCAAGAAAGAATGTAAGTTATAATCTCCATGAGCATTCAGGAAAACATGGAAACGAAAGATATAGGCAAGGCCATACTGAAAGAATGTCTCTCTCTTTTAAGCTGGAAAATCAGGAAGAAATAATTGATGTAGAGGAGCTCAATTCACCTAGACATGGCAAATCAAGAAAGAATGCCAGTTTTAATCCTCATGAGCATTCAAGAAAAGATGGAAAGGATATATACAGGCAAGGCCATACTGAGAGAATGTCTCACTCTTCTAGCAAAATGGAGAGCTTGACATTGGAAAAAAAGCAAAGGGCTATCGAAGCTGCCCAAGAGTTCAATCCAAAAAATCCTTCTTTCACTGCAATAATAAAGTCAACTAATATTACTGGTTATCATCTGGTGAGGAATTTTCAAAGCTGTGTTTCTTTCTCCCTCCCCCACTTCTTCATTTTCAGCTTTGTTTATTGTTCACTCTCCCTCTCTTCCCTTGTGCAGTATGTGCCTTCTTCATTTGCTGCAAAATATATGAGGAAAATGGATTCTATCAAGCTCCAGGACTCTAATGGACAACAATGGGTGGTTCATTGCAATCATCATAAAAGTAGATGGTCAAGTGTTCGAATGCGGAAAGGTTGGATCGGTTTCGCAAGGGATAACCATTTGAAGGAAGGAGATGTCTGTGTGTTCGAGATTATCAAGAGGAAGAACATTGTACTAAAAGTTACCGTATTTCCGTGTTCTTAA 1398 0.4013 MGSKFGSRSRWHSCVGPSVSPASAEPNHFFKIILPEAIHGKKLPSMLLHAQFFMSSIALTVFLPNLYEIYAGLKPAFARIPKESIRRFGNELSSVATVTVPDGLVWKMGLKKSANEVWFCDGWQEFVKYYSISYGSFLVFKYEGNSNFCVVIFDMTAAEIYYPCKNQSNSGEPNLENQHSECLRKRSSLYHCGFDTRSKRHKLEHQEEIIDLDNVNAPTHGKSRKNVSYNLHEHSGKHGNERYRQGHTERMSLSFKLENQEEIIDVEELNSPRHGKSRKNASFNPHEHSRKDGKDIYRQGHTERMSHSSSKMESLTLEKKQRAIEAAQEFNPKNPSFTAIIKSTNITGYHLVRNFQSCVSFSLPHFFIFSFVYCSLSLSSLVQYVPSSFAAKYMRKMDSIKLQDSNGQQWVVHCNHHKSRWSSVRMRKGWIGFARDNHLKEGDVCVFEIIKRKNIVLKVTVFPCS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1537 465 SMART B3_2 371 465 IPR003340 GO:0003677
Glsi04g1537 465 SMART B3_2 62 156 IPR003340 GO:0003677
Glsi04g1537 465 CDD B3_DNA 79 154 IPR003340 GO:0003677
Glsi04g1537 465 ProSiteProfiles B3 DNA-binding domain profile. 63 156 IPR003340 GO:0003677
Glsi04g1537 465 Gene3D - 314 464 IPR015300 -
Glsi04g1537 465 MobiDBLite consensus disorder prediction 266 317 - -
Glsi04g1537 465 CDD B3_DNA 384 463 IPR003340 GO:0003677
Glsi04g1537 465 Pfam B3 DNA binding domain 384 462 IPR003340 GO:0003677
Glsi04g1537 465 Pfam B3 DNA binding domain 79 154 IPR003340 GO:0003677
Glsi04g1537 465 Gene3D - 21 157 IPR015300 -
Glsi04g1537 465 PANTHER B3 DOMAIN-CONTAINING 24 459 - -
Glsi04g1537 465 SUPERFAMILY DNA-binding pseudobarrel domain 77 155 IPR015300 -
Glsi04g1537 465 MobiDBLite consensus disorder prediction 1 21 - -
Glsi04g1537 465 ProSiteProfiles B3 DNA-binding domain profile. 368 465 IPR003340 GO:0003677
Glsi04g1537 465 SUPERFAMILY DNA-binding pseudobarrel domain 368 463 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1537 Glsi-ChrGlsi04 22157985 22160385 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1537 79 462 B3 DNA Binding Superfamily AT3G18990 29.870 1.41e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi04g1537 B3 1.2e-15 CL0405