Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1536 ATGGGGTCCAACTCGGGCTCGAGGTGTCGTCGGCATAGTTGTATCGGGCCATCAGTTTCTCCAGCCAAGGCTGAACCTAGCCACTTTGTCAAGATCATACTTCCTGAAGCCGGTGATGGCAAGAAAGTGGTACGACCCAGTTTTCCTAAACTATTGAATTTCTGTTTGGTTACTGAGAAAATGCAGGAAAGTTGGTGCTGGTTTCTTTCGGTTTTCCAGCCTTCTATGATGTCGCATGTCCAGTTCTTTATGAGTTCTATGAGAATTCCAAATGAATCCATAAAAAGATTTGGGAATGAACTATCTAGTGTGGCGACAGTTACTGTTCCCGACGGTCTTGCTTGGAAAATGGGATTGAAGAAATCTGCTAGCGAGGTTTGGTTTTGCGATGGTTGGCAGGAATTTGTAAAGTACTATTCTATCAGTTATGGCTCCTTTCTAGTCTTCAAATATGAAGGGAATTCAAATTTCTGTGTTTTTATATTTGATATGACTGCTGTTGAGATTTACTATCCATGCAAAAATCAGAGTAACAGTGGGGAACCTAACTTTGAGAACCGGCCTTTGGAGTGTCCTAGGAAAAGGTCCAGTCTTTATCGCTGTGGCTATTACACAAGGAGCAAAAGGCGTAAGGTGGAAAGTCAAGAGGAAATAATTGATTTAGATAATGTCAATGCACCAAGCCATGGAAAATCAAGAAAGAATGTAAGTTATAATCTCCGTGAGCATTCAGGAAAACATGGGAACGAAAGATATAGGCAAGGCCATACTGAAAGAATGTTTCTCTCTTCTAAGCTGGAAAATCAGGAAGAAATAATTGATGTAGAGAAGCTCAATTCACCTAGACATGGCAAATCAAGAAAGAATGCCAGTTTTAATCCTCATGAGCATCCAAGAAAAGATGCAGAAGTTATATATAGGCAAGGCCATACTGAGAGGATGTCTCACTCTTCTAGCAAAATGGAGAGCTTGACATTGAAAAAAAACCCAAGGGCTATTGAAGCTGCCCAGAAGTTCAATCCAAAAAATCCTTCTTTCACTGCAATAATGAAGCCATTTAATATGATTGAACGCTATTTGCATGTGCCTGCCTCGTTTGCTGCAAAATATCTGAGGAAAATGGATTCTATCAAGCTCCAGAACTCTAATGGACAACAATGGGTGGTTCATTGCAATCATCCTAATGGAAGATGCGTAACTACCCGACTGCAAAAGGGTTGGATAAATTTCGCAAGGGACAACCATTTGAAGGAAGATGTCTCAAATCAAGCTGTTGCAGGAAAATCTCTCTTGAAACTACACAAAGCGGATAGATCTAAGACTCCGACAGCTGAACTTGCTTCACTGGACGACTGCGAACTTCAAGAAGAGGATTGA 1377 0.4103 MGSNSGSRCRRHSCIGPSVSPAKAEPSHFVKIILPEAGDGKKVVRPSFPKLLNFCLVTEKMQESWCWFLSVFQPSMMSHVQFFMSSMRIPNESIKRFGNELSSVATVTVPDGLAWKMGLKKSASEVWFCDGWQEFVKYYSISYGSFLVFKYEGNSNFCVFIFDMTAVEIYYPCKNQSNSGEPNFENRPLECPRKRSSLYRCGYYTRSKRRKVESQEEIIDLDNVNAPSHGKSRKNVSYNLREHSGKHGNERYRQGHTERMFLSSKLENQEEIIDVEKLNSPRHGKSRKNASFNPHEHPRKDAEVIYRQGHTERMSHSSSKMESLTLKKNPRAIEAAQKFNPKNPSFTAIMKPFNMIERYLHVPASFAAKYLRKMDSIKLQNSNGQQWVVHCNHPNGRCVTTRLQKGWINFARDNHLKEDVSNQAVAGKSLLKLHKADRSKTPTAELASLDDCELQEED 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1536 458 SUPERFAMILY DNA-binding pseudobarrel domain 339 418 IPR015300 -
Glsi04g1536 458 Gene3D - 67 166 IPR015300 -
Glsi04g1536 458 SUPERFAMILY DNA-binding pseudobarrel domain 64 164 IPR015300 -
Glsi04g1536 458 CDD B3_DNA 344 418 IPR003340 GO:0003677
Glsi04g1536 458 MobiDBLite consensus disorder prediction 279 301 - -
Glsi04g1536 458 Gene3D - 324 421 IPR015300 -
Glsi04g1536 458 CDD B3_DNA 72 163 IPR003340 GO:0003677
Glsi04g1536 458 PANTHER B3 DOMAIN-CONTAINING 24 418 - -
Glsi04g1536 458 ProSiteProfiles B3 DNA-binding domain profile. 72 165 IPR003340 GO:0003677
Glsi04g1536 458 SMART B3_2 346 437 IPR003340 GO:0003677
Glsi04g1536 458 SMART B3_2 79 165 IPR003340 GO:0003677
Glsi04g1536 458 Pfam B3 DNA binding domain 348 418 IPR003340 GO:0003677
Glsi04g1536 458 Pfam B3 DNA binding domain 76 163 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1536 Glsi-ChrGlsi04 22138190 22142070 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1536 87 418 B3 DNA Binding Superfamily AT3G18990 30.973 6.66e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi04g1536 B3 6.9e-11 CL0405