Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1532 ATGGATAAGGGAAAGCATAAATCTAGGAAGGAAGAATCTGACAAGAAGGACATGGATTCCAGCAGGAGTCGCCGGGAACGAGATCGTGATAGAACTGGAGAAAGAGACAAGGAAAGAAATGAAGGGAGGCACAGGGACAGAGAGAAGAGGGATTACGAGTGCCAGCACTATGAGAGAGAGAATAGTAGTGATTCTGAAGAAAGGTATGATAGGGAGAGGGAGAAGCATAGAGATATGAATCATAAAGATAGGACACGTGTTCAGGATGAAGAAAGAGAAAGAGTTCGAGACAAGAAAAGGGAAAGAGACAGACAAAACAGGGAAAGAGAAAGGAGAGACAGGGCAAGGGAGAAAGAAAAAGAGAGAGATAGAGAAAGGGAAAGGAGGGAGGACAGGGAGAGGGGGAGAGAAAGAGAGAGAGAAAGGGAAATTGACAGGAGGGAGCGTGATAGAGAGGGGGAAATGGAAAGAGAAAGGGTGAGGCGAGTGTGTGAGAGGGAGAATCGTAGGGAAGTTGAGAGTGATTATAGTGATGATGATTCTAGGCAGAGAGATAGGAAGCGCCAAAGGAAAGAGAATGATGATTATAAGGGTAGGGAGAAGGAGAGAAGCTTTGGCAACGCAAACAGGTCAACTGAGGATGCTGAAGTGAGCCCTAGGAAAAAGAATAGTGAAGATGACCTAGATACCAAAGGGAGCAAACACGCCTTTGAAGAGGAGATAGAGGATGAACACAAGAGGTTGGATGAAGAAATGGAAAAGAGGAGGAGGAGAGTTCAGGAGTGGCAAGAGCTGAGGAGGAAGAAGGAAGAAGCTGAGAGAGAAAAGCATGGTGAAGCAAGTGCTGATGAACCCAAGTCTGGAAAGACCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGACATATTACAGGGATGCCAGATACAGCTGTGATTGTAGAAGAAGAGGATAAACATACTGATAAAGAGCTTAGGGATTTGATTATGGTAGATGTTGGTAACAGAACAGTTGCATCTGATTTACAGGATGGAACTGCTGGTTATCCTGCAGATGAGGAAATTGATCCATTGGATGCTTTCATGAATTCTATGGTGCTTCCTGAAGTTGAAAAGCTGAACAATGCGTTGGCTCCTTCAGCTACTGACAGAAGTGATCTGTTAAACCCCAATGATAAAGAGGATGAGCAAGGTCATGGTGGACAGTTGAGGAAAGGCACAAATAAATCGATTGGGAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGAAGACCTTGAAAATGAGGGGGATCCATTAGATGAAGATGATGAGGAGTTCCTGAAAAGAGTGAAGAAGACAAAAGCTGAGAAGCTGTCTATAGTTGACCACTCAAAGATTGATTATAAACCATTCAAGAAAAATTTTCATATTGAAGTGAAGGATATCTCAAAGATGACTCCTGAAGAAGTTGCAGAATACAGGAAGCAATTGGAATTGAAGATTCATGGAAAGGATGTGCCAAAGCCTGTAAAATCATGGCACCAGACTGGACTTACTGGGAAAATTTTGGAGACACTAAAGAGACTCAACTATGAAAAGCCAATGTCTATTCAAGCACAGGCACTGCCTATAATTATGAGTGGTCGAGATTGCATAGGCATTGCTAAAACTGGGTCTGGAAAAACACTAGCTTTTGTTTTGCCAATGTTGAGGCACATCAAGGATCAGCCACCAGTTGTTGCGGGGGATGGACCTATTGGGCTTATAATGGCCCCTACGAGGGAGCTTGTTCAACAGATTTACAGTGATATAAAGAAGTTTACAAAGGTACTGGGTCTTAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCCCAGCAAATTAGTGAGTTGAAACGCGGTGCTGAGATATTGGTTTGTACTCCAGGTCGCATGATTGACATACTTTGTACCAGTGGTGGAAAAATAACTAACCTCCGTAGAGTCACTTTTCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCCCAAATAACTCGAATTGTTCAGAATATTCGTCCAGATCGTCAAACTGTTCTATTCTCTGCCACTTTCCCCCGTCAGGTTGAAATTCTAGCTCGTAAGGTTTTGAATAAACCTGTTGAAATTCAAGTTGGTGGAAGAAGTGTTGTGAACAAGGACATAGCACAGCTAATTGAGGTGAGGCCAGAAAATGAGAGGTTCTTGAGGCTCTTAGAATTATTAGGGGAATGGTATGAGAAAGGAAAGATTTTGATTTTTGTACAGTCACAGGAGAAATGTGATGCTTTGTTCAAGGATTTGCTTAGGCATGGTTATCCTTGCCTCTCCCTTCATGGGGCTAAGGATCAGACAGACCGCGAATCCACAATTTCTGACTTTAAAAGCAATGTCTGCAATTTGTTAATAGCAACAAGTGTTGCTTCCAGGGGATTAGATGTCAAGGAGCTTGAATTGGTGATCAATTTTGATGTGCCAAACCACTATGAAGATTATGTACATCGTGTTGGACGTACTGGCCGGGCTGGCCGGAAGGGTTGTGCTATCACATTTGTTTCTGAGGAAGATGCAAGATATGCACCAGATCTGGTGAAAGCCTTGGAACTATCTGAACAAATTGTTCCAAATGACCTGAAAGCTCTTGCTTCTAGCTTTATGACGAAAGTGAATCAAGGACTTGAGCAAGCCCATGGGAGTGGTTATGGAGGCAGTGGTTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAAGAATATGGATTTGAAGAAGACAAATCTGACTCTGAAGATGATGATGAAGGTATTAGGAAGGCAGGAGGTGATATTTCACAGCATCCTGCTCTTGCTCAGATTCTCGTTGCTGCTACAAAAGCGAATTCACCTGCAGTGTCGACTCCCATCTCCTCAGCACAGCTGATTTCAAATGGTGGACAAACTGTTTCTTTGCCATCTGTTCTTGGTCTCCAGACTGCGGCATCAGGGCTGCCCCTTGTTCCAAATGATGGGGCAGCTCGAGCAGCATTGGCTGCTATAAACCTGCAGCATAAGTTAGCAAAGATTGCTGGTGCAATCCCTGAGCATTATGAAGCAGAGTTGGAGATAAATGATTTCCCCCAGAATGCTCGGTGGAAAGTCACACATAAGGAAACTTTGGGTCCAATTGCTGATTGGACTGGGGCTGCTATTACCACTAGAGGACAGTACTTCCCACCTGGCAGGATCCCAGGACCTGGAGAACGCAAACTCTACTTGTTCATTCAGGGCCCAAGTGAGCAGTCTGTTAAAAGAGCTAAAGCAGAGTTGAAGCGTGTTTTGGAAGACATCACAAATCGGGCTTTGCAACTTCCTGGTGGAGCTCAACCAGGCAAATACTCAATTGTTGAGCTCTTGGCTGTTGGTGATTCCATGGTAGATGTGTCTCAAATCTCAATTGCCATTGAAGATTTAATATTCACTCTGTTGAATGAAGGATACAGCTATTTATTAGCTTTAAGTACCTACTTATGTAGGGTGTATAATCGTCATTGTTGGTTTGTGACTGTCAAAAGAGGTGGTGACAGTGCAGCACTTTTTCCATCTAGTACTGTTGAATTTGGAGCAAGCATTTTAGTACACTTGATTATTTCCATTGGAACTACGAAAACAGGAGTTTTCTTAATCTTTCTCTCCCTCGTCTCTTGTTTTACTGTCCCAAAACTATCCAATAGATGTACATGTCTGTTTCCAGAATTAAATTTAATTAGTCCTGGATCTGAGGCAGTTACCTCTGACATAGTCATCAAGAATAATGGAATGGATGACTTGGATGGAACAGAAGCGGAACCGAGAATCTTTACTGAACTGGAGGTTATGCAAGCTTTGCACCGACTAGGAGCAGTTAAGAGGACAGCTTCAAAGAAATTTCTGCTTTCTGCTAGCAAGATAAAATTGCAGTGTGCCCTATCAGATCATGGGCAATTTTATGGTGGATATAATGTCAGAAAAGCCACATATCTTCTGGTTTTGGTGCCACTCTCTATGGTGAAGTTGCTTCAGGGGAGAACCTTATTCACTAATTGTCTTTATCAGGTGAAGTTTCAAGAATTTATGAGGCAGACTTTATGCGGAACAAGAATCAGTGCTGTACAGAATTTGGATGACCGGCGCATCTTGACTGGGACAATATCAATGGTTAATGGTGGAGACCCTTATCTCTACTATACATGGAAGGTTACCGACGGCACCATCTCCCCTTTGGGAGTTCCACAGCAAGTCATTCTTATCAATGGCCAATTTCCAGGGGCAGTCGGTGGTTTTGGTCCCATTCGAATCTTTAGTCGTTCGTTGATTCCTGTTCCTTATGCAAATCCTGAGGATGAGTTCAACGTTTTCATTGGAGATTGGTACACCAAGAGCTACACCAATCTTAAGAAGCTCCTAGATAGTGACCGATCTATTGGCATGCCAAATGGGGTGCTCATCAATGGCAAATCAACTAAGGGCGATGAGCCAGGGAGATGGACCCCAAAGAAAAGGAAAAATTATAACCTTCTTGATACTTTGAGTAGACACACCATTCAAGTATTCCCCAACTCTTGGACTGCCCTATTACTGACATTCGACAATGCTGCAATGTGGAGCTTGAGGTCAGATTTAGCTGAGAATCACTACTTTCCAACAACTCTACATCAGCTCTAA 4716 0.4321 MDKGKHKSRKEESDKKDMDSSRSRRERDRDRTGERDKERNEGRHRDREKRDYECQHYERENSSDSEERYDREREKHRDMNHKDRTRVQDEERERVRDKKRERDRQNRERERRDRAREKEKERDRERERREDRERGREREREREIDRRERDREGEMERERVRRVCERENRREVESDYSDDDSRQRDRKRQRKENDDYKGREKERSFGNANRSTEDAEVSPRKKNSEDDLDTKGSKHAFEEEIEDEHKRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEASADEPKSGKTWTLEGESDDEEGHITGMPDTAVIVEEEDKHTDKELRDLIMVDVGNRTVASDLQDGTAGYPADEEIDPLDAFMNSMVLPEVEKLNNALAPSATDRSDLLNPNDKEDEQGHGGQLRKGTNKSIGRIIPGEESDSDYEDLENEGDPLDEDDEEFLKRVKKTKAEKLSIVDHSKIDYKPFKKNFHIEVKDISKMTPEEVAEYRKQLELKIHGKDVPKPVKSWHQTGLTGKILETLKRLNYEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIYSDIKKFTKVLGLRCVPVYGGSGVAQQISELKRGAEILVCTPGRMIDILCTSGGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLIEVRPENERFLRLLELLGEWYEKGKILIFVQSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVASRGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFVSEEDARYAPDLVKALELSEQIVPNDLKALASSFMTKVNQGLEQAHGSGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDDDEGIRKAGGDISQHPALAQILVAATKANSPAVSTPISSAQLISNGGQTVSLPSVLGLQTAASGLPLVPNDGAARAALAAINLQHKLAKIAGAIPEHYEAELEINDFPQNARWKVTHKETLGPIADWTGAAITTRGQYFPPGRIPGPGERKLYLFIQGPSEQSVKRAKAELKRVLEDITNRALQLPGGAQPGKYSIVELLAVGDSMVDVSQISIAIEDLIFTLLNEGYSYLLALSTYLCRVYNRHCWFVTVKRGGDSAALFPSSTVEFGASILVHLIISIGTTKTGVFLIFLSLVSCFTVPKLSNRCTCLFPELNLISPGSEAVTSDIVIKNNGMDDLDGTEAEPRIFTELEVMQALHRLGAVKRTASKKFLLSASKIKLQCALSDHGQFYGGYNVRKATYLLVLVPLSMVKLLQGRTLFTNCLYQVKFQEFMRQTLCGTRISAVQNLDDRRILTGTISMVNGGDPYLYYTWKVTDGTISPLGVPQQVILINGQFPGAVGGFGPIRIFSRSLIPVPYANPEDEFNVFIGDWYTKSYTNLKKLLDSDRSIGMPNGVLINGKSTKGDEPGRWTPKKRKNYNLLDTLSRHTIQVFPNSWTALLLTFDNAAMWSLRSDLAENHYFPTTLHQL 1571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1532 1571 MobiDBLite consensus disorder prediction 922 936 - -
Glsi04g1532 1571 MobiDBLite consensus disorder prediction 1 305 - -
Glsi04g1532 1571 CDD SF2_C_DEAD 727 857 - -
Glsi04g1532 1571 CDD KH-I_AtRH42_like 1037 1139 - -
Glsi04g1532 1571 SMART helicmild6 767 848 IPR001650 -
Glsi04g1532 1571 Gene3D - 1499 1562 IPR008972 -
Glsi04g1532 1571 Pfam Helicase conserved C-terminal domain 740 848 IPR001650 -
Glsi04g1532 1571 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 661 669 IPR000629 -
Glsi04g1532 1571 Coils Coil 234 275 - -
Glsi04g1532 1571 MobiDBLite consensus disorder prediction 421 437 - -
Glsi04g1532 1571 MobiDBLite consensus disorder prediction 387 402 - -
Glsi04g1532 1571 MobiDBLite consensus disorder prediction 379 438 - -
Glsi04g1532 1571 FunFam probable ATP-dependent RNA helicase DDX17 468 718 - -
Glsi04g1532 1571 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 537 715 IPR014001 -
Glsi04g1532 1571 SUPERFAMILY Cupredoxins 1404 1560 IPR008972 -
Glsi04g1532 1571 Pfam Multicopper oxidase 1507 1559 IPR011706 GO:0005507|GO:0016491
Glsi04g1532 1571 Gene3D - 717 891 IPR027417 -
Glsi04g1532 1571 Coils Coil 88 120 - -
Glsi04g1532 1571 CDD DEADc_DDX46 495 716 - -
Glsi04g1532 1571 MobiDBLite consensus disorder prediction 922 953 - -
Glsi04g1532 1571 SMART ultradead3 525 730 IPR014001 -
Glsi04g1532 1571 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 726 887 IPR001650 -
Glsi04g1532 1571 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 506 534 IPR014014 GO:0003724
Glsi04g1532 1571 MobiDBLite consensus disorder prediction 1 306 - -
Glsi04g1532 1571 Coils Coil 1104 1124 - -
Glsi04g1532 1571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 578 864 IPR027417 -
Glsi04g1532 1571 PANTHER RNA HELICASE 452 926 - -
Glsi04g1532 1571 Pfam DEAD/DEAH box helicase 531 702 IPR011545 GO:0003676|GO:0005524
Glsi04g1532 1571 Gene3D - 458 716 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1532 Glsi-ChrGlsi04 21990113 22003537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1532 493 868 Eukaryotic Initiation Factors Gene Family AT3G19760 31.830 1.20e-57 204