Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1511 ATGGGAAGCCTAACGGACGATCCGAGAGCCCCGAAGCTTCCTATTCATGGCAAGCGCAACATCCTCATCACCAGTGCCTTGCCTTACGTCAACAACGTTCCTCATCTCGGCAACATCATCGGATGTGTGTTGAGTGCTGATGTCTTCGCTCGATATTGCCGGCTTCGGGGATACAATGCTATTTACATCTGCGGGACTGATGAGTATGGGACAGCAACAGAGACTAAAGCCATGGAAGAGAACTGCTCTCCTAAAGAGATTTGTGACAAATACTATGCTATTCATAAAGAGGTCTACAAATGGTTCAATATAAGTTTTGATGAATTTGGACGGACATCAAGCCCACAACAAACTGAAGTTTGCCAATCAATCTTTAAGAAACTATTAGAGAACAACTGGCTCTCTGAGAACACAATGCAGCAGCTTTACTGTGATACTTGCGAAAGGTTCTTAGCTGACCGGCTTGTGGAGGGTACCTGCCCAACTCCAGGGTGTGAGTATGATTCGGCACGAGGAGATCAATGTGAGAAGTGTGGAAAGCTTTTGAATCCAACAGAGTTGAGAAGTCCCAGGTGCAAGGTTTGTCAAAAATCTCCACGTATTCGTGATACAAACCACTTGTTTCTTGAACTCCCTCTGTTGAAAGAGAGATTGGAAAAATATATCAATGAAATGTCAGTGGTGGGTTTGTGGAGTCAAAATGCTGTCCAAACAACACATTCGTGGCTTAAAGAAGGATTAAAGCCGCGATGTATAACCAGGGATCTGAAGTGGGGAGTTCCAGTTCCACACGAGAAATTCAAGGACAAGGTTTTCTATGTCTGGTTTGATGCACCAATTGGATATGTATCAATCACTTCAAGTTACACACCTGATTGGGAGAAATGGTGGAAGGACCCAGAGAATGTGGAGCTGTATCAGTTTATGGGCAAAGACAATGTGCCATTCCACACTGTGATGTTTCCCTCAACTCTACTTGGAACTGGGGAAAATTGGACTTTGATGAAGACCATTAGTGTTACTGAATACTTGAATTATGAAGCAGGGAAGTTCTCCAAAAGCAAAGGTGTTGGAGTTTTTGGTAATGATGCAAAAGATACTAATATTCCAGTTGAAGTATGGAGATATTACCTGCTCATCAACAGGCCTGAGGTATCAGACACGTTATTTACATGGCCTGACTTGCAAGCAAAACTAAACAGTGAGTTGCTGAGTAATTTGGGCAACTTCATCAACCGAGTTTTGAGTTTTGTTGCTAAACCTCCAGGTCAAGGATATGGTTCCATTATTCCCACCATTCCAGATGATCTAAGTGCTGACTCCCACGAACCAACAAAAAAGTTGGCTGACAAAGTTGCTGCATATGTGGAGCTTTATATAGAAGCAATGGAGAAGGTTAAACTTAAGCAAGGATTGAAAAATGCAATGAGCATATCCAGTGAGGGGAATGGGTATCTGCAGGAAACTGAATTCTGGCGTCTTTACAAGGAAAACCAGTCTCTCTGCTCCCTGGTTATGAAAACTGCAGTTGGGCTTGTATATCTTCTTGCATGTTTATTGGAACCTTTTATGCCATCTTTCACACTTGAGGTATTTAAGCAGCTAAATTTGCCTCCTGAGGTGCATGTTTCACTTTGTGACGAAAAAGGAGATGTTAATAGGGTAAAAAGACCTTGCGAGATCGTAAGTGCTGGTCATAAAATTGGCACACCACAACCATTGTTTAGGGAGCTGAAAGATGAAGAAGTGGAGTTCTACAGGATGAAATTTGCTGGAAGTCAGGCTGATAGGATTGTCCGGGCAGAGGTTGAGGCTGGAAAGGTTGTTGAGCAACTGAAAAAAACAAAAGTTTCAGATGGTAATGGAAAGAAAAAACAATCAACAAAGTCTTCAAATGAAGCAAAAAACAAGGCTTCTGCTGAACCAGAAATTTCCATAACAAGGCTTGACATTCGTGTTGGTCTTATAAAAAAGGCTCAAAAACATCCTGATGCAGATGCACTATATGTAGAAGAGATTGATGTGGGCGAAGAACAGCCCAGAACTGTTGTCAGTGGGCTTGTCAAGTATATACCACTCGATGAAATGCAGAACCGGAAGGTTTGCGTCCTTTGTAATCTAAAGCCCGCAACCATGCGGGGCATTAAATCCCAAGCAATGGTTCTTGCTGCTTCCAATGGTGACCATACCAAGGTTGAGTTGGTTGAGCCACCCAGTTCTGCTCATATTGGAGAGAGAGTTACATTCCCAGGGTATGAAGGTGTTCCTGATGAAATCTTAAACCCAAAGAAGAAGGTATGGGAAACATTGCAAGTCGAACTGCACACCAATGAGGAATTAGTTGCATGCTATAAAGATGTTCCACTCACCACGTCAGCAGGCATTTGCAAGGTTTCATCCATACCCAGTGGGTCAATAAGGTAG 2424 0.4282 MGSLTDDPRAPKLPIHGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEENCSPKEICDKYYAIHKEVYKWFNISFDEFGRTSSPQQTEVCQSIFKKLLENNWLSENTMQQLYCDTCERFLADRLVEGTCPTPGCEYDSARGDQCEKCGKLLNPTELRSPRCKVCQKSPRIRDTNHLFLELPLLKERLEKYINEMSVVGLWSQNAVQTTHSWLKEGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYVSITSSYTPDWEKWWKDPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLINRPEVSDTLFTWPDLQAKLNSELLSNLGNFINRVLSFVAKPPGQGYGSIIPTIPDDLSADSHEPTKKLADKVAAYVELYIEAMEKVKLKQGLKNAMSISSEGNGYLQETEFWRLYKENQSLCSLVMKTAVGLVYLLACLLEPFMPSFTLEVFKQLNLPPEVHVSLCDEKGDVNRVKRPCEIVSAGHKIGTPQPLFRELKDEEVEFYRMKFAGSQADRIVRAEVEAGKVVEQLKKTKVSDGNGKKKQSTKSSNEAKNKASAEPEISITRLDIRVGLIKKAQKHPDADALYVEEIDVGEEQPRTVVSGLVKYIPLDEMQNRKVCVLCNLKPATMRGIKSQAMVLAASNGDHTKVELVEPPSSAHIGERVTFPGYEGVPDEILNPKKKVWETLQVELHTNEELVACYKDVPLTTSAGICKVSSIPSGSIR 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1511 807 CDD Anticodon_Ia_Met 399 535 IPR041872 -
Glsi04g1511 807 FunFam Methionine--tRNA ligase 156 192 - -
Glsi04g1511 807 Gene3D - 156 192 IPR029038 -
Glsi04g1511 807 ProSiteProfiles tRNA-binding domain profile. 645 748 IPR002547 GO:0000049
Glsi04g1511 807 Pfam Putative tRNA binding domain 651 745 IPR002547 GO:0000049
Glsi04g1511 807 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 156 192 IPR029038 -
Glsi04g1511 807 CDD MetRS_core 20 390 IPR033911 GO:0004825|GO:0006431
Glsi04g1511 807 FunFam tyrosine--tRNA ligase, cytoplasmic isoform X2 644 807 - -
Glsi04g1511 807 Pfam tRNA synthetases class I (M) 21 415 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Glsi04g1511 807 CDD tRNA_bind_EMAP-II_like 644 748 - -
Glsi04g1511 807 FunFam Methionine--tRNA ligase cytoplasmic 404 577 - -
Glsi04g1511 807 Gene3D - 405 577 - -
Glsi04g1511 807 Gene3D HUPs 20 403 IPR014729 -
Glsi04g1511 807 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 407 589 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Glsi04g1511 807 SUPERFAMILY Nucleic acid-binding proteins 647 791 IPR012340 -
Glsi04g1511 807 Pfam Anticodon binding domain of methionyl tRNA ligase 443 594 IPR041872 -
Glsi04g1511 807 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 28 39 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Glsi04g1511 807 NCBIfam methionine--tRNA ligase 21 540 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Glsi04g1511 807 SUPERFAMILY Nucleotidylyl transferase 18 402 - -
Glsi04g1511 807 Gene3D - 644 807 IPR012340 -
Glsi04g1511 807 PRINTS Methionyl-tRNA synthetase signature 307 322 IPR033911 GO:0004825|GO:0006431
Glsi04g1511 807 PRINTS Methionyl-tRNA synthetase signature 56 70 IPR033911 GO:0004825|GO:0006431
Glsi04g1511 807 PRINTS Methionyl-tRNA synthetase signature 23 36 IPR033911 GO:0004825|GO:0006431
Glsi04g1511 807 PRINTS Methionyl-tRNA synthetase signature 104 115 IPR033911 GO:0004825|GO:0006431
Glsi04g1511 807 PRINTS Methionyl-tRNA synthetase signature 272 283 IPR033911 GO:0004825|GO:0006431
Glsi04g1511 807 PRINTS Methionyl-tRNA synthetase signature 402 413 IPR033911 GO:0004825|GO:0006431
Glsi04g1511 807 PANTHER METHIONINE--TRNA LIGASE 9 804 IPR023458 GO:0004825
Glsi04g1511 807 MobiDBLite consensus disorder prediction 614 641 - -
Glsi04g1511 807 Hamap Methionine--tRNA ligase [metG]. 19 589 IPR023458 GO:0004825
Glsi04g1511 807 MobiDBLite consensus disorder prediction 614 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1511 Glsi-ChrGlsi04 19878381 19902887 Dispersed