Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1506 ATGCCAAATGGTGCTCTTAATAATGAAAAAGCAACCCAAAGCCCAAAGGAGTTACTTACGGGTGGTTCACAAGTGGAAAAGAATGGCAAGGGTAATAAAGAGAATTCACTTATAGCTAAAATGGGCCAAGTGTTCCCAATAGGTAAAGAAGTGGTTTTAAGGGCAGATAGGAGAAATTTGATTGTCTCAACTTCAGGATTTACACCTACAACTAACCTTGGAAGGTATTTGGGTGTCCTACTTCTACACAAAAAGGCTTCCAAAAGCACTTACCATAAGCTTGAATTGGATTATGGTGTGCATACACAGACAGAACCACCAAGCGTGGTTACTTGTGCTCTACAGAGAGACCAAACACGGGCAGCCGAGGTTGCTGATCAGATTCATTTGTTATACCATTCCAAGAATTGTTTGAGAAAAATGATGAGGCTACAGACTTATGCGGGGCTTAGTTTGATTGCAACTTTAGCTGTCACATACCATGCATTCAACAGCAGAGGCCAGTTTTATCCAGCAATGGTTTTTCTGTCAACTTCCAAGATCAGTTTGGTACTTCTTCTCAACATGGGTCTGGTCATTATGTGTCTTTTATGGCAATTAACGAAAAAGGTATTCCTTGGCTCACTTCGAGAAGCAGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGATTATGGAAATTCTCTTTGCAATCACCATTTTTAGGCAGGATTTCTCTGTTACATTCCTTGCTATGGTCACAGCACTGTTGTTGATCAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTTGAATACATTGAGACCACTCCTTCAGTGCCCTTGTTGTCTCACATTCGAATTGTATCTTTTATGGGTTTCCTCCTTCTTCTCGATGGACTCTTTTTATATAGTGCTATGAAGCATTTGATACAATCGTGGCAGGCTTCAGTTTCCCTCTTCTTTTCTTTTGAGTACATGATACTGGCAACAACAACGGTGTCAATTTTTGTAAAATATCTTTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAGGAAACCAGTCTTCACGTTTTATCTGGAACTCATTAGAGATTTGCTTCACTTGTCAATGTATATGTGCTTCTTTCTCGTAATTTTCATAAACTATGGTGTTCCTTTGCACTTAATACGAGAGCTGTACGAGACATTTAGGAACTTCAGAGTTCGTGTTGCCGATTATGTACGTTATCGTAAGATCACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGACGCAACCTGCATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTATATGCGGACATCTTTTTCATGTGCATTGCCTTCGGTCATGGTTGGAGCGGCAGCATACTTGCCCTACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGGACAACAGCTGCTGGAGGGCAGCATGGATCACAGTCAGATGCTCATCGATCGGGAACAGGGGCGGGCACAGGAAGCACAGCTCAAGCTGAAGTTGGTGGTGAGGTGGCAACTGATAATTTGAGTCGGCATCAAGCAAGACTCCGAGCTGCTGCTGCAGCTGCTTCAATATATGAGAAGTCTTATGTATACCCCTCTGCAACTTCTTTAGTATGCTCCCCTGGATACACTATTTATCCTCCTGTTCAAAGACCTGCAAATGAATGGACTAATATTGAGCTTAATGGAGAACAAGCTTCCAGTGAACAAACACAGAGACATTTTGTAATCCCTGGTGGACCAATTAACGTTTCCTTTCCTCCAACGGGGCAGTTTCTTTTTCCTCCTTCTCAAACACACACAGCCCATGTAAATTATGGAGAGCGGTCTGGATTCGATTCAAATATGCCAAGCTCTCAGCAGGAAGCTCAAAGAAAACTTCTTGAATACCAGATTGAGATTCTGCAAAATCAACTCCAGCTTCTGCAGAAGACGAGGGTTGAGGGAAGTGTAGCTGAGGGCAAATCATCATTAGATAGCAAAGGCAAGAACATTGCTTCCTCTTCATCTGTGTCTGACCATGGTCGTCATGATGAATTTCAAGATGGCAGTGCATAA 2091 0.4256 MPNGALNNEKATQSPKELLTGGSQVEKNGKGNKENSLIAKMGQVFPIGKEVVLRADRRNLIVSTSGFTPTTNLGRYLGVLLLHKKASKSTYHKLELDYGVHTQTEPPSVVTCALQRDQTRAAEVADQIHLLYHSKNCLRKMMRLQTYAGLSLIATLAVTYHAFNSRGQFYPAMVFLSTSKISLVLLLNMGLVIMCLLWQLTKKVFLGSLREAEVERLNEQSWREIMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPLLSHIRIVSFMGFLLLLDGLFLYSAMKHLIQSWQASVSLFFSFEYMILATTTVSIFVKYLFYVSDMLMEGQWERKPVFTFYLELIRDLLHLSMYMCFFLVIFINYGVPLHLIRELYETFRNFRVRVADYVRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTAAGGQHGSQSDAHRSGTGAGTGSTAQAEVGGEVATDNLSRHQARLRAAAAAASIYEKSYVYPSATSLVCSPGYTIYPPVQRPANEWTNIELNGEQASSEQTQRHFVIPGGPINVSFPPTGQFLFPPSQTHTAHVNYGERSGFDSNMPSSQQEAQRKLLEYQIEILQNQLQLLQKTRVEGSVAEGKSSLDSKGKNIASSSSVSDHGRHDEFQDGSA 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1506 696 MobiDBLite consensus disorder prediction 657 696 - -
Glsi04g1506 696 Pfam Ring finger domain 431 470 IPR001841 -
Glsi04g1506 696 ProSiteProfiles Zinc finger RING-type profile. 432 470 IPR001841 -
Glsi04g1506 696 SMART ring_2 432 469 IPR001841 -
Glsi04g1506 696 MobiDBLite consensus disorder prediction 1 31 - -
Glsi04g1506 696 MobiDBLite consensus disorder prediction 1 33 - -
Glsi04g1506 696 SUPERFAMILY RING/U-box 412 476 - -
Glsi04g1506 696 Coils Coil 629 656 - -
Glsi04g1506 696 MobiDBLite consensus disorder prediction 482 508 - -
Glsi04g1506 696 CDD RING-H2_synoviolin 429 470 - -
Glsi04g1506 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 477 IPR013083 -
Glsi04g1506 696 MobiDBLite consensus disorder prediction 480 508 - -
Glsi04g1506 696 PANTHER RING ZINC FINGER PROTEIN 132 667 - -
Glsi04g1506 696 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 404 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1506 Glsi-ChrGlsi04 19736158 19745960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1506 141 680 C3H Transcription Factor Family AT3G16090 65.441 0.0 674