Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1497 ATGGGGACCCGACCTCAGCAACCATTTCGAGAGGAAGAGGAGGAGGAGGAGGTAACAGGACATGGAACACCAATTTCAGGCCAATCAATTTCAACAAGCAGAAGTGTTGGGTCGCCATCCAGCCGGAGTGAGCAGACAATGGCAACACTGGCCAGTGATAACAATATTCTGAGACTAAACCATCTTGACATCCATGGTGATGATGCTGGATCCCAGGGAGCAGTTGTTAGCAAGAAGAAAAAGAGAGGCCAACGTGCTGTTGGAGGTGATAAGAGTGGAAGAGGGCTTCGCCAATTTAGCATGAAAGTGTGTGAGAAGGTGGAAAGCAAGGGAAGAACTACTTACAATGAGGTAGCAGATGAACTTGTGGCTGAATTTGCTGGCCCAAGCAGTAGTGTTTCGTCTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTTTATGATGCTTTGAATGTTCTCATGGCAATGGATATCATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTCCCTCATACTAGTCTGAACGATATTGAAGAACTAAAGATGGAGCGTCATGGGCTCAGGAATAGGATTGAAAAGAAAGCTGCCTACCTGCAAGAGCTGGAGGATCAATACATAGGTCTTCAGAACCTCATACAACGAAATGAGGAATTATATAGCTCAGAAAATGCTCCCAGTGGAGGTGTAGCTTTACCTTTTCTTCTAGTACAGACTCGCCCCCATGCAACAGTTGAAGTGGAAATATCTGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCTTTTGAGCTGCATGATGACAACTATGTCCTTAAGGCAATGAAATTTTGTGATAGACCACAGAGTGATAATACAACACACAATCTTACGGATGGAGGTGAAGGTTCCCACATGTCAGGCTATTGTCAGGCGCAGATTCCTCCTTCAGTTTCAAACCAACCAGTTAGAACTCCCACCTCACCACCTCTCCCTGGAATATTGAAGGCAAGAGTTAAGCATGAGCATTAA 1032 0.4428 MGTRPQQPFREEEEEEEVTGHGTPISGQSISTSRSVGSPSSRSEQTMATLASDNNILRLNHLDIHGDDAGSQGAVVSKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFAGPSSSVSSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPHTSLNDIEELKMERHGLRNRIEKKAAYLQELEDQYIGLQNLIQRNEELYSSENAPSGGVALPFLLVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQSDNTTHNLTDGGEGSHMSGYCQAQIPPSVSNQPVRTPTSPPLPGILKARVKHEH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1497 343 CDD DP_DD 179 282 IPR014889 -
Glsi04g1497 343 MobiDBLite consensus disorder prediction 1 47 - -
Glsi04g1497 343 FunFam Transcription factor-like protein DPB 180 304 - -
Glsi04g1497 343 PIRSF Txn_factor_DP 6 343 IPR015648 GO:0005667|GO:0051726
Glsi04g1497 343 SUPERFAMILY E2F-DP heterodimerization region 180 295 IPR037241 -
Glsi04g1497 343 MobiDBLite consensus disorder prediction 288 343 - -
Glsi04g1497 343 SMART DP_2 181 341 IPR014889 -
Glsi04g1497 343 MobiDBLite consensus disorder prediction 67 94 - -
Glsi04g1497 343 Coils Coil 190 224 - -
Glsi04g1497 343 PANTHER TRANSCRIPTION FACTOR DP 21 296 IPR015648 GO:0005667|GO:0051726
Glsi04g1497 343 Pfam Transcription factor DP 182 295 IPR014889 -
Glsi04g1497 343 SMART E2F_TDP_2 91 174 IPR003316 GO:0005667|GO:0006355
Glsi04g1497 343 FunFam Transcription factor-like protein DPB 86 179 - -
Glsi04g1497 343 Gene3D - 86 179 IPR036388 -
Glsi04g1497 343 Pfam E2F/DP family winged-helix DNA-binding domain 94 174 IPR003316 GO:0005667|GO:0006355
Glsi04g1497 343 SUPERFAMILY "Winged helix" DNA-binding domain 94 175 IPR036390 -
Glsi04g1497 343 Gene3D Transcription factor DP 180 315 IPR038168 -
Glsi04g1497 343 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1497 Glsi-ChrGlsi04 19301356 19317127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1497 92 283 E2F-DP Transcription Factor Family AT5G02470 56.477 1.04e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Glsi04g1497 DP 6.2e-42 No_clan