Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1461 ATGGAAGGAGTTCATGGTGGGGCGGCGAATTCGGCTGCGGTGAATGTGAATTCTCCGCCGCCATTCCTGAGCAAGACCTATGACATGGTAGACGACCCGTCCACCAACTCGGTGGTGTCATGGAGTGATGACAACAATAGCTTTGTTGTTTGGAATGTGCCCGAATTCGCCAGGGACATCTTGCCTAAGTATTTTAAGCACAACAATTTCTCCAGCTTCGTCAGGCAGTTGAATACTTACGGTTTTAGAAAGGTTGACCCAGACCGCTGGGAATTTGCAAATGAAGGATTTTTAAGGGGTCAAAAACAACTTTTGAAGAATATTAGTAGGCGGAAACCTGTTCACGTAAGTGGTAATCAACAACCATCTCCGGTGCAGAACTCACCAGTTGGGGCATGTGTTGAAGTGGGGAAGTTTGGGCTTGAGGAAGAGGTAGAAAGATTGAAAAGGGATAAGAATGTTCTCATGCAGGAACTTGTTAGGTTGAGACAACAACAGCAAGCAACTGATAACCAATTGCAAGGTGTTGGGCAACGTGTGCAGGTAATGGAGCAGCGTCAGCAACAAATGATGTCATTTCTGGCAAAGGCCATGCAGAGTCCAGGCTTCTTGTCACAGTTTGTACAGCAGCAGAGTGAAAGTAACAGACACATTACTGGAGGCAATAAAAAGAGGAGACTTCACAGGCAGGAAGAAGATATTTTAGCCACTGAGCATCTCTGTAATACTCTTGATGGACGTGTTGTTAAGTATCAACCTTCTATGAATGAGGCTGCAAAAGCATTATGGCGCCAGATATTGCAAATGAATCCATCTGCAACGATGGAATCATCAATAAAGAATCCTGATGCTTTCCTTATTGATGATGTTCCTTCTGCTGTTGCATTAGATAGCAGGAGTTCCACAAGTCACTCTTCAGGAGTGACCCTTTCCGAGGTTCCACCTACTTCTGGCCAGTCTTATAGAGCAGTGCAATCGCAATTTCCAGTTAATTTGATGCCCAATAACATATCTGAGATGCAGTCCCCTAGTGCTGTGTTGGCTGACAGTGTCAAAGCAGCTGAATTTACTGAATTAAATTTGCATAATTGCCCAGACAAAGTATTGGATTTTAGTAAAGCTCAAGGGATGGAGACAGAAAGCGGTTTAGCGGATCCTGAACTGAATTTTGTGGGGCCTGACACTGGGAATGCAGAGGACATAGACATGATGTCTGCAGTTTTGGATGGAACACAGTCTGTAGAAGTAGAAGCTGATGCTTTCTCGCCTGATCCAGATGGAATTTCTAAGCTCCCAAGCATTAATGATGTTTTTTGGGAACAATTTCTCACAGCAAGCCCACTTACGGGAGATACAGATGAAATTAGTTGTAGCTCTCTTGGAGATGGTTTGGCCCAAGACCAGGATATTCCGTCTGAAAAGGAGAATGGACTGGAAAAGATAAAGCATATTGATCATCTTACTCAACAGATGGGACTTCTGGCATCCCAGTCTTCTTAA 1500 0.442 MEGVHGGAANSAAVNVNSPPPFLSKTYDMVDDPSTNSVVSWSDDNNSFVVWNVPEFARDILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKNISRRKPVHVSGNQQPSPVQNSPVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQGVGQRVQVMEQRQQQMMSFLAKAMQSPGFLSQFVQQQSESNRHITGGNKKRRLHRQEEDILATEHLCNTLDGRVVKYQPSMNEAAKALWRQILQMNPSATMESSIKNPDAFLIDDVPSAVALDSRSSTSHSSGVTLSEVPPTSGQSYRAVQSQFPVNLMPNNISEMQSPSAVLADSVKAAEFTELNLHNCPDKVLDFSKAQGMETESGLADPELNFVGPDTGNAEDIDMMSAVLDGTQSVEVEADAFSPDPDGISKLPSINDVFWEQFLTASPLTGDTDEISCSSLGDGLAQDQDIPSEKENGLEKIKHIDHLTQQMGLLASQSS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1461 499 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi04g1461 499 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi04g1461 499 SUPERFAMILY "Winged helix" DNA-binding domain 17 111 IPR036390 -
Glsi04g1461 499 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi04g1461 499 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi04g1461 499 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi04g1461 499 Gene3D - 14 112 IPR036388 -
Glsi04g1461 499 FunFam Heat shock transcription factor 1 15 112 - -
Glsi04g1461 499 Coils Coil 138 165 - -
Glsi04g1461 499 MobiDBLite consensus disorder prediction 297 318 - -
Glsi04g1461 499 ProSitePatterns HSF-type DNA-binding domain signature. 61 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi04g1461 499 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 300 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1461 Glsi-ChrGlsi04 18290769 18295364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1461 16 498 HSF AT5G16820 55.061 3.21e-160 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi04g1461 HSF_DNA-bind 2.8e-33 CL0123