Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1456 ATGGAAGATACCTCATCATCTGATGACAATTGCAAAATAGAAGCAACAGTTTGTGGGGTATCCGGGTCCATAAACAAAAAGAAAAAAGAAGGGGCCGGTAGGCGCTTCCCAGAATCTACTAAGATGGGAAGAAAAAATGGAGGAAGGTCACTGCAAGAAATTCTTCGTCGTCGCCTCGAGTCCTGCAAATCCAGATACTCAACCGTTGATGAAATTGTGAACCATCTTCGCTCAAGTTACCCTGATTACCAGCGAACAAAGCAACAAACTTTGACTCGATTTGTTCTTGAAGCTTTGGAATCATCTAAGCGTGGGAACAAGCAGTTGAACAGAAAGACTGCTATTCCTATATTGAAACATGACGTCTCAGAAGATTATGAGGACGAAGAAGAAGTGGGTCGAAGTGCATCTCGAAAGAGGCGGAAGAAAATTAATGAGGGTGAAGAGATGCGAAAAATGGAGAATTTACACCTTAGAAGGTTACGGAGGGATGAGGGCCGTTCATCAACGTCGTCTGCTTCAACTTCTAGTCCATCATTGTTGTCGGAGTCGGAGGAGAGTGATGGCGAAGATGGGGCAGTGTCTACGTCAGAGGATGCAATTTATGGGGAGAAAGTGGAACCCTGCTTTGACTTGATGAAGACAATGTTGCGAGCTTCATATACAGAAACGAAGAATACGAAACCCATTGTGGAGGAGAAAAACCTTGAATTGGAGGTGATCAATAATATTAAGGCGACAAAGGTTGATGCTGTGAATGGGGGTGGGGGTGAGGTGAAAACGGGCTTGGAATCGAAGAGGCAGTTGAGGGGTTCAGTTTCTAATGGCAGTGGTGATGTTGAGGTGAAGGGGAAGGATGGACTCAGGTTTAAAGATTTGGGGGGGATGAAGGAGGTTTTGGAGGAATTGAAGATGGAGGTTATTGTGCCACTTTACCATCCGCAGTTGCCAAGAAGGTTAGGGGTGAGGCCAATGGCAGGGATTTTATTGCATGGACCACCCGGGTGTGGGAAAACTAAACTGGCTCATGCTATAGCTAATGAGACTGGTCTTCCGTTCTATAAGATATCGGCCACGGAGGTTGTTTCTGGAGTTTCGGGAGCATCTGAAGAAAATATTAGAGAGCTTTTCTCTAAAGCATACAGGACTGCCCCTTCAATTGTCTTTATTGATGAGATTGATGCAATTGCTTCAAAAAGAGAAAATTTACAACGTGAAATGGAGAAACGAATCGTGACGCAATTAATGACTTCTATGGATCAATCGCACAGGCTTCTGCAACCAGCTGATAGTTCAGAAAGTTCGGATGCCCCTCCTGGCTATGTTCTTGTAATTGGAGCTACAAATAGGCCTGATGCTGTTGACCCAGCTCTGAGAAGGCCTGGGCGGTTTGATCGGGAGATTGTCCTTGGCATTCCTGATGAGCATGCAAGGGAGGAGATCTTGTCTGTGCTTACCCACAATCTTAAACTTGAGGGCTCATTTGATCTTCAAAAAATAGCCAGGTCTACACCAGGTTTTGTTGGAGCTGATTTGGCAGCTCTGGCTAACAAGGCTGGTAACCTAGCGATGAAGAGAATTATTGATGAAAGGAAACGTGAATTATCCCAAGATCTTTTGGATGAGCATACCGAAGAGTGGTGGAGGGAACCTTGGTTGCCTGAAGAGATGGATAAGCTTGCCATCAAAATGTCTGATTTTGAGGAAGCAGTCAAATTGGTGCAGCCTTCATCAAGAAGAGAAGGATTTTCTTCCATTCCTAATGTAAAATGGGAAGATGTTGGTGGGCTTGATCTTCTAAGACAAGAGTTTGAGCGTTATATAGTTAGACGCATAAAATATCCGGAGGATTATGAGGGATTTGGGGTGGATCTTGAGACGGGATTTTTACTTTATGGACCCCCAGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAGGCAGGAGCTAATTTCATTCATATTAAGGGCCCTGAAATTTTAAATAAATACGTTGGAGAAAGTGAGCTAGCAGTTCGGACATTGTTTAGTCGGGCAAGGACATGTTCACCTTGCATACTTTTCTTTGATGAGGTGGATGCTTTGACAACCAAACGTGGCAAAGAAGGTGGATGGGTTGTTGAACGACTATTAAACCAGTTACTTATTGAATTAGATGGTGCTGAGCAAAGGCAAGGTGTTTTTGTTATTGGTGCTACAAACAGGCCTGAGGTGATGGACCGTGCTGTCCTTCGGCCCGGTAGGTTTGGTAAACTTCTTTATGTTCCTCTGCCAAGCCCAGATGAGCGAGTTTTGATTTTAAAAGCTCTTTCAAGGAAGAAGCCTGTTGATGACAGTGTGGATTTGAGTGCTATTGCAAGAATGGAAGCTTGTGAAAATTTAAGCGGCGCTGATCTTGCTGCATTGATGAATGAAGCAGCGATGGCTGCTCTAGAAGAGAAATTGACATCAACCGAGAGAACTTGTGATACATTGACTATCAAGGAAAGTCATTTTGAGATAGCACTAAGGAAAATCTCTCCATCTGTGTCAGACATGCAAAAACAATACTATCAGCGTTTGTCAGAGAGTTTTTAG 2583 0.439 MEDTSSSDDNCKIEATVCGVSGSINKKKKEGAGRRFPESTKMGRKNGGRSLQEILRRRLESCKSRYSTVDEIVNHLRSSYPDYQRTKQQTLTRFVLEALESSKRGNKQLNRKTAIPILKHDVSEDYEDEEEVGRSASRKRRKKINEGEEMRKMENLHLRRLRRDEGRSSTSSASTSSPSLLSESEESDGEDGAVSTSEDAIYGEKVEPCFDLMKTMLRASYTETKNTKPIVEEKNLELEVINNIKATKVDAVNGGGGEVKTGLESKRQLRGSVSNGSGDVEVKGKDGLRFKDLGGMKEVLEELKMEVIVPLYHPQLPRRLGVRPMAGILLHGPPGCGKTKLAHAIANETGLPFYKISATEVVSGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTSMDQSHRLLQPADSSESSDAPPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGIPDEHAREEILSVLTHNLKLEGSFDLQKIARSTPGFVGADLAALANKAGNLAMKRIIDERKRELSQDLLDEHTEEWWREPWLPEEMDKLAIKMSDFEEAVKLVQPSSRREGFSSIPNVKWEDVGGLDLLRQEFERYIVRRIKYPEDYEGFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEILNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAEQRQGVFVIGATNRPEVMDRAVLRPGRFGKLLYVPLPSPDERVLILKALSRKKPVDDSVDLSAIARMEACENLSGADLAALMNEAAMAALEEKLTSTERTCDTLTIKESHFEIALRKISPSVSDMQKQYYQRLSESF 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1456 860 Gene3D - 760 839 - -
Glsi04g1456 860 SMART AAA_5 324 474 IPR003593 GO:0016887
Glsi04g1456 860 SMART AAA_5 625 761 IPR003593 GO:0016887
Glsi04g1456 860 MobiDBLite consensus disorder prediction 27 42 - -
Glsi04g1456 860 MobiDBLite consensus disorder prediction 26 48 - -
Glsi04g1456 860 MobiDBLite consensus disorder prediction 168 183 - -
Glsi04g1456 860 Gene3D - 279 471 IPR027417 -
Glsi04g1456 860 FunFam Ribosome biogenesis ATPase RIX7 279 471 - -
Glsi04g1456 860 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 587 857 IPR027417 -
Glsi04g1456 860 PANTHER AAA-FAMILY ATPASE 139 859 - -
Glsi04g1456 860 FunFam Cell division control protein 48 homolog C 473 581 - -
Glsi04g1456 860 Pfam ATPase family associated with various cellular activities (AAA) 630 758 IPR003959 GO:0005524|GO:0016887
Glsi04g1456 860 Pfam ATPase family associated with various cellular activities (AAA) 328 470 IPR003959 GO:0005524|GO:0016887
Glsi04g1456 860 ProSitePatterns AAA-protein family signature. 729 747 IPR003960 GO:0005524|GO:0016887
Glsi04g1456 860 Gene3D - 473 581 - -
Glsi04g1456 860 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 289 579 IPR027417 -
Glsi04g1456 860 ProSitePatterns AAA-protein family signature. 442 460 IPR003960 GO:0005524|GO:0016887
Glsi04g1456 860 Gene3D - 587 853 IPR027417 -
Glsi04g1456 860 Coils Coil 810 830 - -
Glsi04g1456 860 CDD RecA-like_NVL_r2-like 597 757 - -
Glsi04g1456 860 MobiDBLite consensus disorder prediction 124 200 - -
Glsi04g1456 860 MobiDBLite consensus disorder prediction 131 167 - -
Glsi04g1456 860 Pfam AAA+ lid domain 781 835 IPR041569 -
Glsi04g1456 860 Pfam AAA+ lid domain 495 530 IPR041569 -
Glsi04g1456 860 FunFam ATPase, AAA family protein 587 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1456 Glsi-ChrGlsi04 18206613 18218533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1456 560 860 Calmodulin-binding Proteins AT3G56690 43.564 3.93e-68 243