Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1442 ATGAGTGGGGCATGTAGGTCTTGTCCTTTGCTCCCTTGCGACGACGCGTCAGGTTTGGAGCAGTTTCCAATGCTGTTCGTGATTTCCTCGTTGCCACAGATTTCTCCTCGCTACTTGCTGCTTGCTTTTATGCAATTACTTAATGGGGGTATGATCATCATAAGCAGATTCTGCCGGGACTCTCAAGTTATAACATGCAAAGCTGCTGTATGCTGGGGGGTAGGGGAGAAGACTGTGAAGGTGGAAGAGATAACAGTAGACCCACCAAAAGCATCAGAAGCTCGAGTTAAGATGCTTTATGCAAGTGTCTGTCACACAGACATTTTGAGTGCTCGAGGACTTCCAAATCCCAAATTTCCTCAAGCACTAGGGCATGAAGGAGTTGGTGTCGTTGAGAGCGTTGGGGAGAAAGTAACAAATTTGAAGGCAGGAGATGTGGTGATTCCTACCTACATAGGCGAGTGCGAAGAATGTGAGAACTGCGTTTCAGGGGAATCCAACCTGTGCCTGACACATCCTCTGAGGGTAAATGGCCTAATGCCTGATAACACTTCAAGAATGTCCATCAGAGGTCAGAAGATATACCATATTTTTAGCTGCTCCACGTGGTCTGAATACATGGTTATTGATGCCAACTATCTTCTCAAAGTTGATCCAAACATTGATCTGGCTCATGCTAGCTTCATCTCGTGTGGGTTCTCTACTGGTTTTGGGGCTGCTTGGAAGGAAGCCAAGGTTGAAAGAGGATCAACTGTGGCTGTTTTCGGCCTCGGAGCTGTTGGATTAGGGGCTATAAATGGAGCCAAAATGGCGCGGGCAGCCAAGATAATTGGGATTGACAAAAATGTGATGAAGAGAGAAAAAGGAGAGGCTTTTGGAATGACTGACTTTATAAATCCTAGTGAATCAGATAAACCTGTTTCAGAATTGATCAGGGAACTAAGCGATGGAATGGGTGTGGATTATTCCTTTGAGTGCTCTGGAGTTGCCCCTTTGTTGAATGAAGCCCTGAAAGCCACCAAAGTGGGGAAAGGAGAGGCAATAGCAATTGGTGCAGGATCTGAATCTTTTGTGCATATCAATTGGCGGGCTCTTCTACGTGGTAGGACTTTAAAGGGTTCCATTTTTGGAGGGTTGAAAGCCAAATCGGACCTTTCTATTATAGCTAGCAAATGCCAGAAAAAGGAATTCCCTCTTGATGAACTTCTGACCCATGAAGTCCCATTAACAGACATAAGCAGAGCATTTGAGCTGCTGAAACAGCCAGAATGTGTTAAAGTTATAATCAAAATATGA 1296 0.4498 MSGACRSCPLLPCDDASGLEQFPMLFVISSLPQISPRYLLLAFMQLLNGGMIIISRFCRDSQVITCKAAVCWGVGEKTVKVEEITVDPPKASEARVKMLYASVCHTDILSARGLPNPKFPQALGHEGVGVVESVGEKVTNLKAGDVVIPTYIGECEECENCVSGESNLCLTHPLRVNGLMPDNTSRMSIRGQKIYHIFSCSTWSEYMVIDANYLLKVDPNIDLAHASFISCGFSTGFGAAWKEAKVERGSTVAVFGLGAVGLGAINGAKMARAAKIIGIDKNVMKREKGEAFGMTDFINPSESDKPVSELIRELSDGMGVDYSFECSGVAPLLNEALKATKVGKGEAIAIGAGSESFVHINWRALLRGRTLKGSIFGGLKAKSDLSIIASKCQKKEFPLDELLTHEVPLTDISRAFELLKQPECVKVIIKI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1442 431 FunFam S-(hydroxymethyl)glutathione dehydrogenase 236 374 - -
Glsi04g1442 431 PANTHER ALCOHOL DEHYDROGENASE 62 423 - -
Glsi04g1442 431 Gene3D - 236 374 - -
Glsi04g1442 431 SUPERFAMILY GroES-like 61 248 IPR011032 -
Glsi04g1442 431 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 124 138 IPR002328 GO:0008270|GO:0016491
Glsi04g1442 431 Gene3D - 69 426 - -
Glsi04g1442 431 Pfam Alcohol dehydrogenase GroES-like domain 92 217 IPR013154 -
Glsi04g1442 431 SUPERFAMILY GroES-like 383 429 IPR011032 -
Glsi04g1442 431 FunFam alcohol dehydrogenase 1-like isoform X1 75 235 - -
Glsi04g1442 431 SMART PKS_ER_names_mod 75 429 IPR020843 GO:0016491
Glsi04g1442 431 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 221 390 IPR036291 -
Glsi04g1442 431 CDD liver_alcohol_DH_like 64 430 - -
Glsi04g1442 431 Pfam Zinc-binding dehydrogenase 259 379 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1442 Glsi-ChrGlsi04 17821870 17828256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1442 93 231 Monolignol Biosynthesis Gene Families AT4G37980 30.769 1.58e-12 66.2