Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1441 ATGAGCACCTCACAAGTTATCACATGCAAAGCTGCGGTATGCTGGGGGATAGGAGAGGGTGTGAAGGTGGAAGAGATACAGGTTGATCCACCAAAAGCGTCAGAAGTTAGAGTTAAGATGCATTGTGCCAGTATCTGTCACACGGACATATTAAACATGAAAGGATTCCCACGTGCTAATTATCCTCTAGCTCTAGGACATGAAGGAGTTGGTGTTGTGGAGAGTACAGGGGAGAAAGTAACAAACCTGAAAGTAGGGGATGTGGTGATTCCATTATACATAGGGGAGTGCCAAGAATGCGAGAACTGCATTTCAGGGAAGACTAACCTATGCATGACACACCCTATGATATTGAGTGGCCTGATGCCAGACAACACTTCGAGAATTTCCGTCAGAGGCCAAAGGGCATACCACAATCTGAGCTGCCCCACATGGTCCGAATACATGGTAGTTGATGCCAACTACCTTCTCAAGGTTGACCCAACCATTGATCCAGCCCATGCCAGCTTCATCTCTTGTGGGTTCTCAACTGGTTTTGGGGGTGCTTGGAAGGAAGCCAATGTTGAAAAGGGATCAAGTGTAGCTGTTTTTGGTCTTGGTGCTGTTGGACTAGGGGCTATAAGTGCAGCCAAAATGTTGGGAGCAACAAAGATAATTGGGATTGACAAAAATGAGCTGAAGAGGGGAAAAGGAGAAGCATTTGGAATGACACACTTCATAAATCCTAGTAAATCAGAGAAATCTGCTTCAAAATGGATCAAAGAATTGTGTGGTGGAATTGGTGTGGATTATTCCGTTGAGTGCACTGGAGTTGGCCCTTTGCTCAGCGAAGCCATGGAATCCACTAAAGTGGGCACAGGTAAGACAATAGCTATCGGTGCAACTGAAGCTATTGTGCAACTCAGTCTTTTTGCCGTTATATATGGAAGAACATTGAAGGGTTCTATTTTTGGAGGCCTAAAAGCAAAATCTGACCTTTCTATTATAGTAGACAAGTGCCAGAAAAAGGAAATACCCCTTGATGAACTTCTGACCCATGAAGTCCCACTGGCCGATATAAGCACTGCCTTGGAGCTATTGAAACAGCCAGATTGCGTCAAGGTTGTCATCAAGATGTGA 1119 0.4495 MSTSQVITCKAAVCWGIGEGVKVEEIQVDPPKASEVRVKMHCASICHTDILNMKGFPRANYPLALGHEGVGVVESTGEKVTNLKVGDVVIPLYIGECQECENCISGKTNLCMTHPMILSGLMPDNTSRISVRGQRAYHNLSCPTWSEYMVVDANYLLKVDPTIDPAHASFISCGFSTGFGGAWKEANVEKGSSVAVFGLGAVGLGAISAAKMLGATKIIGIDKNELKRGKGEAFGMTHFINPSKSEKSASKWIKELCGGIGVDYSVECTGVGPLLSEAMESTKVGTGKTIAIGATEAIVQLSLFAVIYGRTLKGSIFGGLKAKSDLSIIVDKCQKKEIPLDELLTHEVPLADISTALELLKQPDCVKVVIKM 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1441 372 SUPERFAMILY GroES-like 3 185 IPR011032 -
Glsi04g1441 372 PANTHER ALCOHOL DEHYDROGENASE 5 364 - -
Glsi04g1441 372 CDD liver_alcohol_DH_like 7 371 - -
Glsi04g1441 372 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Glsi04g1441 372 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 163 334 IPR036291 -
Glsi04g1441 372 Gene3D - 178 315 - -
Glsi04g1441 372 SMART PKS_ER_names_mod 16 370 IPR020843 GO:0016491
Glsi04g1441 372 FunFam S-(hydroxymethyl)glutathione dehydrogenase 178 315 - -
Glsi04g1441 372 FunFam alcohol dehydrogenase 1-like isoform X1 17 177 - -
Glsi04g1441 372 SUPERFAMILY GroES-like 323 370 IPR011032 -
Glsi04g1441 372 Pfam Zinc-binding dehydrogenase 201 320 IPR013149 -
Glsi04g1441 372 Gene3D - 12 367 - -
Glsi04g1441 372 Pfam Alcohol dehydrogenase GroES-like domain 34 159 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1441 Glsi-ChrGlsi04 17752629 17756712 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1441 34 364 Monolignol Biosynthesis Gene Families AT2G21730 27.893 1.97e-19 87.0